havok2063
commented
11 months ago snakeviz profiles on %snakeviz -t c.load_data(s3d[2])
Open havok2063 opened 11 months ago
havok2063
commented
11 months ago snakeviz profiles on %snakeviz -t c.load_data(s3d[2])
Jdaviz component
Other (explain in Description below)
Description
Not a bug per se. Data loading into the image viewers for all viz tools is now noticeably slower after updating to Jdaviz 3.7, with its deps. This happens for images in Imviz, spatial slices in Cubeviz, and spectral image data in Specviz2d. It's noticeable in the MAST web, but also noticeable in a local notebook loading data. The slowdown is after the initial Jdaviz skeleton app loads, when data is being added into the viewers. It now takes ~30-40 seconds to load data into the viewer, whereas it used to take a second or so after the app loaded. The exact packages used in the MAST environment are included in the software versions section.
See e.g.
Locally tested with files
How to Reproduce
Expected behavior
Data loading into viewers to be comparable to what it was in Jdaviz 3.4. Or if this is the new normal, perhaps a warning label.
Browser
Chrome and Firefox
Jupyter
jupyter --version
Software versions
anyio==4.0.0 argon2-cffi==23.1.0 argon2-cffi-bindings==21.2.0 arrow==1.3.0 asb-config @ https://dsbcm.stsci.edu:9443/job/ASB/job/asb-config/job/master/187/artifact/asb-config/asb.config-0.1.187-py3-none-any.whl asdf==3.0.0 asdf-astropy==0.4.0 asdf-coordinates-schemas==0.2.0 asdf-standard==1.0.3 asdf-transform-schemas==0.3.0 asdf-unit-schemas==0.1.0 asdf-wcs-schemas==0.2.0 asteval==0.9.31 astropy==5.3.4 astroquery==0.4.6 asttokens==2.4.0 async-lru==2.0.4 attrs==23.1.0 babel==2.13.0 backcall==0.2.0 beautifulsoup4==4.12.2 bleach==6.1.0 bqplot==0.12.42 bqplot-gl==0.0.0 bqplot-image-gl==1.4.11 casa-formats-io==0.2.1 certifi==2023.7.22 cffi==1.16.0 charset-normalizer==3.3.0 click==8.1.7 cloudpickle==3.0.0 comm==0.1.4 contourpy==1.1.1 coverage[toml]==7.3.2 cryptography==41.0.4 cycler==0.12.1 dask[array]==2023.10.0 debugpy==1.8.0 decorator==5.1.1 defusedxml==0.7.1 dill==0.3.7 echo==0.8.0 et-xmlfile==1.1.0 exceptiongroup==1.1.3 executing==2.0.0 fast-histogram==0.12 fastjsonschema==2.18.1 fonttools==4.43.1 fqdn==1.5.1 freetype-py==2.4.0 fsspec==2023.9.2 glue-astronomy==0.10.0 glue-core==1.13.1 glue-jupyter==0.19.0 glue-qt==0.2.0 glue-vispy-viewers==1.1.0 gwcs==0.19.0 h5py==3.10.0 hsluv==5.0.4 html5lib==1.1 idna==3.4 imageio==2.31.5 importlib-metadata==6.8.0 iniconfig==2.0.0 ipydatawidgets==4.3.5 ipygoldenlayout==0.4.0 ipykernel==6.25.2 ipympl==0.9.3 ipypopout==1.1.0 ipysplitpanes==0.2.0 ipython==8.16.1 ipython-genutils==0.2.0 ipyvolume==0.6.3 ipyvue==1.10.1 ipyvuetify==1.8.10 ipywebrtc==0.6.0 ipywidgets==8.1.1 isoduration==20.11.0 jaraco-classes==3.3.0 jdaviz==3.7.0 jedi==0.19.1 jeepney==0.8.0 jinja2==3.1.2 jmespath==1.0.1 joblib==1.3.2 json5==0.9.14 jsonpointer==2.4 jsonschema[format-nongpl]==4.19.1 jsonschema-specifications==2023.7.1 jupyter-client==8.4.0 jupyter-core==5.4.0 jupyter-events==0.8.0 jupyter-lsp==2.2.0 jupyter-server==2.8.0 jupyter-server-terminals==0.4.4 jupyterlab==4.0.7 jupyterlab-pygments==0.2.2 jupyterlab-server==2.25.0 jupyterlab-widgets==3.0.9 keyring==24.2.0 kiwisolver==1.4.5 lazy-loader==0.3 locket==1.0.0 markupsafe==2.1.3 matplotlib==3.8.0 matplotlib-inline==0.1.6 mistune==3.0.2 more-itertools==10.1.0 mpl-scatter-density==0.7 nbclient==0.7.4 nbconvert==7.9.2 nbformat==5.9.2 ndcube==2.1.3 nest-asyncio==1.5.8 networkx==3.2 notebook==7.0.6 notebook-shim==0.2.3 numpy==1.26.1 openpyxl==3.1.2 overrides==7.4.0 packaging==23.2 pandas==2.1.1 pandocfilters==1.5.0 parso==0.8.3 partd==1.4.1 pexpect==4.8.0 photutils==1.9.0 pickleshare==0.7.5 pillow==10.1.0 platformdirs==3.11.0 pluggy==1.3.0 prometheus-client==0.17.1 prompt-toolkit==3.0.39 psutil==5.9.6 ptyprocess==0.7.0 pure-eval==0.2.2 pvextractor==0.3 pycparser==2.21 pyerfa==2.0.1 pygments==2.16.1 pyopengl==3.1.7 pyparsing==3.1.1 pytest==7.4.2 pytest-cov==4.1.0 pytest-mock==3.11.1 pytest-sugar==0.9.7 python-dateutil==2.8.2 python-json-logger==2.0.7 pythreejs==2.4.2 pytz==2023.3.post1 pyvo==1.4.2 pyyaml==6.0.1 pyzmq==25.1.1 qtconsole==5.4.4 qtpy==2.4.0 radio-beam==0.3.6 referencing==0.30.2 regions==0.7 requests==2.31.0 rfc3339-validator==0.1.4 rfc3986-validator==0.1.1 rpds-py==0.10.6 scikit-image==0.22.0 scipy==1.11.3 secretstorage==3.3.3 semantic-version==2.10.0 send2trash==1.8.2 sidecar==0.7.0 six==1.16.0 sniffio==1.3.0 soupsieve==2.5 specreduce==1.3.0 spectral-cube==0.6.3 specutils==1.12.0 stack-data==0.6.3 stdatamodels==1.8.3 synphot==1.2.1 termcolor==2.3.0 terminado==0.17.1 tifffile==2023.9.26 tinycss2==1.2.1 tomli==2.0.1 toolz==0.12.0 tornado==6.3.3 traitlets==5.11.2 traittypes==0.2.1 types-python-dateutil==2.8.19.14 typing-extensions==4.8.0 tzdata==2023.3 uri-template==1.3.0 urllib3==2.0.7 vispy==0.14.1 voila==0.4.3 voila-embed @ git+https://github.com/mariobuikhuizen/voila-embed.git@dc3db6aad3f995e8b88394bd30d025eda51d46df wcwidth==0.2.8 webcolors==1.13 webencodings==0.5.1 websocket-client==1.6.4 websockets==11.0.3 widgetsnbextension==4.0.9 xlrd==2.0.1 zipp==3.17.0
🐱