apply `ruff format` and `pre-commit` checks

[zacharyburnett]

apply pre-commit across repository

Checklist for PR authors (skip items if you don't have permissions or they are not applicable)

• [x] ~added entry in CHANGES.rst within the relevant release section~
• [x] ~updated or added relevant tests~
• [x] ~updated relevant documentation~
• [ ] added relevant milestone
• [x] added relevant label(s)
• [x] ~ran regression tests, post a link to the Jenkins job below. How to run regression tests on a PR~
• [ ] All comments are resolved
• [x] ~Make sure the JIRA ticket is resolved properly~

[codecov[bot]]

Codecov Report

Attention: Patch coverage is 75.73427% with 347 lines in your changes missing coverage. Please review.

Project coverage is 59.52%. Comparing base (4b77a5e) to head (02bdaca).

Files with missing lines	Patch %	Lines
jwst/cube_build/cube_build_step.py	52.67%	53 Missing :warning:
jwst/cube_build/blot_cube_build.py	3.22%	30 Missing :warning:
jwst/assign_wcs/niriss.py	52.83%	25 Missing :warning:
jwst/cube_build/cube_build_io_util.py	78.78%	21 Missing :warning:
jwst/ami/ami_average.py	0.00%	17 Missing :warning:
jwst/cube_build/cube_build.py	78.48%	17 Missing :warning:
jwst/combine_1d/combine1d.py	72.54%	14 Missing :warning:
jwst/background/background_sub.py	48.00%	13 Missing :warning:
jwst/assign_wcs/nirspec.py	94.31%	12 Missing :warning:
jwst/assign_wcs/util.py	82.81%	11 Missing :warning:
... and 36 more

Additional details and impacted files

```diff @@ Coverage Diff @@ ## master #8648 +/- ## ========================================== - Coverage 59.60% 59.52% -0.09% ========================================== Files 391 391 Lines 39286 39373 +87 ========================================== + Hits 23418 23436 +18 - Misses 15868 15937 +69 ```

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.

[zacharyburnett]

these are way too many changes with diminishing returns for development; closing