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spacetx / slicedimage

MIT License
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Propagate tile_format for multi-level images #77

Closed ttung closed 5 years ago

ttung commented 5 years ago

Currently, the tile format is correctly set when we write a TileSet. If we writte a Collection, the tile format needs to be propagated to the lower level write calls.

Test plan:

[tt (.venv)]:~/microscopy/starfish:master> python examples/get_iss_breast_data.py /Users/ttung/Downloads/starfish_data/mignardi_breast_1/raw/ ../starfish-formatted-data/breast/ 1
[tt (.venv)]:~/microscopy/starfish:master> file ../starfish-formatted-data/breast/primary_image-fov_000-Z0-H0-C0.tiff
../starfish-formatted-data/breast/primary_image-fov_000-Z0-H0-C0.tiff: TIFF image data, little-endian, direntries=14, height=1044, bps=16, compression=none, PhotometricIntepretation=BlackIsZero, description={"shape": [1044, 1390]}, width=1390