spacetx / spacetx-research

Contains research projects related to image-based transcriptomics assays
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poission-gaussian observation model #7

Open dalessioluca opened 4 years ago

dalessioluca commented 4 years ago

In fluorescent microscopy the observation model should be poisson-gaussian since the brighter a pixel the more photon the more poisson noise. Things get complicated b/c CCD cameras have offsets. Porbavbly the parameter of the observation model (constant term, linear term and offset) should be learned. Ask Mehrtash and Tianle

dalessioluca commented 4 years ago

Another possibility is to do Anscombe transformation and trasnform the data to have Gaussian noise only. See paper: Poisson-Gaussian noise + Anscombe transformation: https://arxiv.org/abs/1812.10366

dalessioluca commented 4 years ago

looking at the empirical variance vs average plot it does not seems that the Poisson-Gaussian model is correct.

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