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spacetx / spacetx-writer

Convert supported filesets to the SpaceTx format
https://spacetx-starfish.readthedocs.io/en/stable/sptx-format/
GNU General Public License v2.0
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Detect "(DAPI|Nuclei)" as auxiliary image #1

Open joshmoore opened 5 years ago

joshmoore commented 5 years ago

Discussed during the 2019 SpaceJam in Seattle. Longer-term, the model may be adapted to add metadata to a channel in the main tensor.

joshmoore commented 5 years ago

see https://github.com/spacetx/starfish/issues/1317

I am using spacetx writer but it is not clear how to add auxiliary images like NUCLEI that must be separated from primary ones