search

spacetx / spacetx-writer

Convert supported filesets to the SpaceTx format
https://spacetx-starfish.readthedocs.io/en/stable/sptx-format/
GNU General Public License v2.0
3 stars 1 forks source link

Processing large fields of views #4

Open atarkowska opened 5 years ago

atarkowska commented 5 years ago

It would be useful if image/plane greater then Starfish 3Kx3K threashold (https://github.com/spacetx/starfish/issues/627) could be retiled to 2D files for processing large fields of views

Simillar to what is possible in bfconvert https://docs.openmicroscopy.org/bio-formats/6.2.1/users/comlinetools/conversion.html#cmdoption-bfconvert-tilex

ttung commented 5 years ago

We don't have a tile size threshold any more, AFAIK.

joshmoore commented 5 years ago

https://github.com/spacetx/starfish/blob/master/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/tiles.json#L50 ?