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spacetx / starfish

starfish: unified pipelines for image-based transcriptomics
https://spacetx-starfish.readthedocs.io/en/latest/
MIT License
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parameterize trackpy_local_max_peak_finder? #1801

Open neuromusic opened 4 years ago

neuromusic commented 4 years ago

https://github.com/spacetx/starfish/blob/47de54081c61e68932364a7fb53ed0f6cb5752b5/starfish/core/spots/FindSpots/trackpy_local_max_peak_finder.py#L134

mattcai commented 4 years ago

Clarification of issue from @ambrosejcarr:

Users of starfish have asked for different types of summaries of intensity values to be reported for those algorithms that integrate over spots. Max, mean, and sum are all examples of reduction operations that could do the integration.