Displaying example from data formatting tutorial

[vals]

After going through the tutorial on how to format image data for Starfish (https://spacetx-starfish.readthedocs.io/en/latest/gallery/data_formatting/plot_format_structured_data.html#sphx-glr-gallery-data-formatting-plot-format-structured-data-py) I wanted to use the display() function to look at it. But if you do e.g.

imgs = e.fov().get_image('primary')
display(nuclei)

napari launches with 'Not Responding' status and crashes the Python interpreter when you kill the window.

Related to https://github.com/openjournals/joss-reviews/issues/2440

[mattcai]

I am not able to recreate your issue. Does the display() function work for you when you run the quickstart tutorial?

After running the code in format structred data tutorial I am able to look at the (blank) images with:

from starfish import display
imgs = exp.fov().get_image('primary')
viewer = display(imgs)

[neuromusic]

Hey @vals, can you confirm that this is an issue on the quickstart tutorial, too?

If you continue to see this bug, can you post the output of the following...

import platform; print(platform.platform())
import sys; print("Python", sys.version)
import numpy; print("NumPy", numpy.__version__)
import scipy; print("SciPy", scipy.__version__)
import skimage; print("scikit-image", skimage.__version__)
import pandas; print("pandas", pandas.__version__)
import sklearn; print("sklearn", sklearn.__version__)
import xarray; print("xarray", xarray.__version__)
import sympy; print("sympy", sympy.__version__)
import starfish; print("starfish", starfish.__version__)
import napari; print("napari", napari.__version__)

thanks!

[neuromusic]

I'm going to close this issue, but please feel free to re-open @vals if you continue to see the problem.