spacetx / starfish

starfish: unified pipelines for image-based transcriptomics
https://spacetx-starfish.readthedocs.io/en/latest/
MIT License
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Add necessary coords for IntensityTable when using Nearest Neighbors strategy #1928

Closed mattcai closed 3 years ago

mattcai commented 3 years ago

A starfish user wants to try the Nearest Neighbor Trace Builder but had issues because the IntensityTable was missing the spot_id coord and features dim. This pull request adds those to the IntensityTable so a full starfish pipeline (as demonstrated in the Quick Start tutorial) can be built and run. This does not necessarily mean the Nearest Neighbor Trace Builder will give satisfactory results when tested on real data.