Add min_distance parameter to peak_local_max call

[iimog]

Before this change, multiple local maxima were returned even within the min_distance if their values were identical. This lead to over-segmentation in some cases.

See #2006

[berl]

@nickeener @ctcisar do you have any recommendations for the CI fails above?

[nickeener]

@berl the failure appears to be in the starfish/test/full_pipelines/api/test_iss_api.py::test_iss_pipeline_cropped_data test which is not something that we ever messed with, sorry.

[iimog]

I found the problem in the iss test. Indeed, the assumption on the number of detected cells had to be updated from 6 to 4. I think this makes sense. The previous pipeline output was this:

The new pipeline output is this:

So the number of detected cells did change from 6 to 4.

[iimog]

The docker build could not install all dependencies via pip because of this error:

ERROR: botocore 1.32.6 has requirement urllib3<1.27,>=1.25.4; python_version < "3.10", but you'll have urllib3 2.0.7 which is incompatible.

Pinning urllib3 to that range in REQUIREMENTS fixes the build.

[berl]

this is awesome! all that work put in by many people making end-to-end tests of these methods did exactly what it was supposed to. I'll review and merge