spatialtopology / spacetop-prep

code for transferring data and preprocessing
MIT License
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[DUP] sub-0038_ses-02_task-narratives_acq-mb8_run-01 #11

Closed jungheejung closed 2 months ago

jungheejung commented 2 years ago

TODO:

fmriprep output

               ./sub-0038/ses-02/func/sub-0038_ses-02_task-narratives_acq-mb8_run-01_bold__dup-01.json
                        Evidence: sub-0038_ses-02_task-narratives_acq-mb8_run-01_bold__dup-01.json
                ./sub-0038/ses-02/func/sub-0038_ses-02_task-narratives_acq-mb8_run-01_bold__dup-01.nii.gz
                        Evidence: sub-0038_ses-02_task-narratives_acq-mb8_run-01_bold__dup-01.nii.gz
                ./sub-0038/ses-02/func/sub-0038_ses-02_task-narratives_acq-mb8_run-01_sbref__dup-01.json
                        Evidence: sub-0038_ses-02_task-narratives_acq-mb8_run-01_sbref__dup-01.json
                ./sub-0038/ses-02/func/sub-0038_ses-02_task-narratives_acq-mb8_run-01_sbref__dup-01.nii.gz
                        Evidence: sub-0038_ses-02_task-narratives_acq-mb8_run-01_sbref__dup-01.nii.gz

scannotes

Align video code was run while short vid ran on scanner. Repeated the run.

jungheejung commented 5 months ago
jungheejung commented 2 months ago
CASE 3: DUP BOLD limbo
        ./sub-0038/ses-03/func/sub-0038_ses-03_task-shortvideo_acq-mb8_run-01_bold.json
        * ./sub-0038/ses-03/func/sub-0038_ses-03_task-shortvideo_acq-mb8_run-01_bold__dup-01.json limbo BOLD NOR DUP matches expected TR
        BOLD TR: 1640 vs. DUP TR: 539 vs. EXPECTED TR 1616
        BOLD TIME: 58752 vs. DUP TIME: 58360

Issue at hand. Expected TR is 1616. BOLD itself is 1640 Is this a onetime thing? We also see it in participant sub-0075 Best to. keep BOLD, which is longer than expected TR