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spatialtopology / spacetop-prep

code for transferring data and preprocessing
MIT License
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sub-0016 fmap name deviation #3

Closed jungheejung closed 4 months ago

jungheejung commented 3 years ago 
    1: [ERR] Files with such naming scheme are not part of BIDS specification. This error is most commonly caused by typos in file names that make them not BIDS compatible. Please consult the specification and make sure your files are named correctly. If this is not a file naming issue (for example when including files not yet covered by the BIDS specification) you should include a ".bidsignore" file in your dataset (see https://github.com/bids-standard/bids-validator#bidsignore for details). Please note that derived (processed) data should be placed in /derivatives folder and source data (such as DICOMS or behavioural logs in proprietary formats) should be placed in the /sourcedata folder. (code: 1 - NOT_INCLUDED)
            ./sub-0016/ses-01/fmap/sub-0016_ses-01_acq-mb8_dir-ap_run+-PVC-run-04_epi.json
                    Files with such naming scheme are not part of BIDS specification. This error is most commonly caused by typos in file names that make them not BIDS compatible. Please consult the specification and make sure your files are named correctly. If this is not a file naming issue (for example when including files not yet covered by the BIDS specification) you should include a ".bidsignore" file in your dataset (see https://github.com/bids-standard/bids-validator#bidsignore for details). Please note that derived (processed) data should be placed in /derivatives folder and source data (such as DICOMS or behavioural logs in proprietary formats) should be placed in the /sourcedata folder.
                    Evidence: sub-0016_ses-01_acq-mb8_dir-ap_run+-PVC-run-04_epi.json
            ./sub-0016/ses-01/fmap/sub-0016_ses-01_acq-mb8_dir-ap_run+-PVC-run-04_epi.nii.gz
                    Files with such naming scheme are not part of BIDS specification. This error is most commonly caused by typos in file names that make them not BIDS compatible. Please consult the specification and make sure your files are named correctly. If this is not a file naming issue (for example when including files not yet covered by the BIDS specification) you should include a ".bidsignore" file in your dataset (see https://github.com/bids-standard/bids-validator#bidsignore for details). Please note that derived (processed) data should be placed in /derivatives folder and source data (such as DICOMS or behavioural logs in proprietary formats) should be placed in the /sourcedata folder.
                    Evidence: sub-0016_ses-01_acq-mb8_dir-ap_run+-PVC-run-04_epi.nii.gz
            ./sub-0016/ses-01/fmap/sub-0016_ses-01_acq-mb8_dir-pa_run=-PVS-run-04_epi.json
                    Files with such naming scheme are not part of BIDS specification. This error is most commonly caused by typos in file names that make them not BIDS compatible. Please consult the specification and make sure your files are named correctly. If this is not a file naming issue (for example when including files not yet covered by the BIDS specification) you should include a ".bidsignore" file in your dataset (see https://github.com/bids-standard/bids-validator#bidsignore for details). Please note that derived (processed) data should be placed in /derivatives folder and source data (such as DICOMS or behavioural logs in proprietary formats) should be placed in the /sourcedata folder.
                    Evidence: sub-0016_ses-01_acq-mb8_dir-pa_run=-PVS-run-04_epi.json
            ./sub-0016/ses-01/fmap/sub-0016_ses-01_acq-mb8_dir-pa_run=-PVS-run-04_epi.nii.gz
jungheejung commented 2 years ago 
scannotes:
"- started really late because audio was producing a lot of white noise + inbalanced
- PVC: RUN04 - new scout and new distcorr - yoked with run 456 (participant had to use restroom)
- PVC: during run 04 - heard a beep (50 degree program error) >> quickly stopped test - luckily was able to complete run (didn't interfere with run)"
jungheejung commented 2 years ago

TO DO:

jungheejung commented 4 months ago

heudiconv detects shim settings and renames fieldmaps. Resolved