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spatialtopology / spacetop-prep

code for transferring data and preprocessing
MIT License
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[DUP] sub-0034_ses-04_task-fractional_acq-mb8_run-01 #9

Closed jungheejung closed 4 months ago

jungheejung commented 2 years ago

TODO:

fmriprep output

                ./sub-0034/ses-04/func/sub-0034_ses-04_task-fractional_acq-mb8_run-01_bold__dup-01.json
                        Evidence: sub-0034_ses-04_task-fractional_acq-mb8_run-01_bold__dup-01.json
                ./sub-0034/ses-04/func/sub-0034_ses-04_task-fractional_acq-mb8_run-01_bold__dup-01.nii.gz
                        Evidence: sub-0034_ses-04_task-fractional_acq-mb8_run-01_bold__dup-01.nii.gz
                ./sub-0034/ses-04/func/sub-0034_ses-04_task-fractional_acq-mb8_run-01_sbref__dup-01.json
                        Evidence: sub-0034_ses-04_task-fractional_acq-mb8_run-01_sbref__dup-01.json
                ./sub-0034/ses-04/func/sub-0034_ses-04_task-fractional_acq-mb8_run-01_sbref__dup-01.nii.gz
                        Evidence: sub-0034_ses-04_task-fractional_acq-mb8_run-01_sbref__dup-01.nii.gz

scannotes

none

jungheejung commented 7 months ago
jungheejung commented 7 months ago

Issue is due to using scan squence numbers instead of scan time. If scanner crashes, using sequence numbers are prone to error. https://github.com/nipy/heudiconv/issues/740

jungheejung commented 4 months ago

Primary file has a later timestamp

CASE 1: BOLD is primary; delete DUPS
        Conditions met for ./sub-0034/ses-04/func/sub-0034_ses-04_task-fractional_acq-mb8_run-01_bold__dup-01.json. Removing file.
        ./sub-0034/ses-04/func/sub-0034_ses-04_task-fractional_acq-mb8_run-01_bold.json
        BOLD TR: 1322 vs. DUP TR: 1322 vs. EXPECTED TR 1323
        BOLD TIME: 30836 vs. DUP TIME: 29916
        REMOVE: ./sub-0034/ses-04/func/sub-0034_ses-04_task-fractional_acq-mb8_run-01_*__dup-01.*

Safe to delete DUP