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speciationgenomics / scripts

Scripts for analysis used during the course
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Newest version of checkHetsIndvVCF.sh not working #15

Closed CIWa closed 1 year ago

CIWa commented 1 year ago

Hi Joana and Mark,

thanks a lot for making this repository available to everyone; an awesome resource!

I just wanted to report that the current version of checkHetsIndvVCF.sh is not working. Running it with different vcf-files, some of them zipped, some not, results in the following error:

Rscript outputting your plots
Error in file(file, "rt") : cannot open the connection
Calls: read.table -> file
Execution halted

The older version (without x-axsis pruning) works.

Best wishes, Isabel

lpittet92 commented 5 months ago

Hello, I am having the same problem and don't have access to the older version ! Could someone help me with this issue ?

All the best, Loïc