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spectral-cockpit
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opusreader2
Read OPUS binary files from Fourier-Transform Infrared (FT-IR) spectrometers of the company Bruker Optics GmbH & Co. in base R
https://spectral-cockpit.github.io/opusreader2/
MIT License
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π§ Fix tic CI : Ubuntu lastest-(R)-relase and latest-(R)-devel fail
#54
philipp-baumann
closed
1 year ago
2
π§ Fix tic CI : Ubuntu lastest-(R)-relase and latest-(R)-devel fail
#53
philipp-baumann
closed
1 year ago
1
πΎ We can probably reduce the memory footprint (alloc read & parsed size)
#52
philipp-baumann
closed
1 year ago
13
π Name first level of list returned by `read_opus()` with string containing file name (DSN)
#51
philipp-baumann
closed
1 year ago
4
β Fix pre-commit config and files, add code check in GitHub actions
#50
philipp-baumann
closed
1 year ago
3
βπβ Fix pre-commit config and files, add code check in GitHub actions
#49
philipp-baumann
closed
1 year ago
1
Return default value first for `parallel` argument in if else
#48
philipp-baumann
closed
1 year ago
2
Split functions
#47
ThomasKnecht
closed
1 year ago
1
dsn folder: include only OPUS files with ".<number>"
#46
philipp-baumann
closed
1 year ago
1
allow to read opus files from directories (recursive) which also contain other file types in read_opus()
#45
laura-summerauer
closed
1 year ago
3
𧱠Metadata extraction helper
#44
philipp-baumann
closed
10 months ago
1
By default recurse directory for dsn
#43
philipp-baumann
closed
1 year ago
0
π Support power spectra in `create_dataset()`
#42
philipp-baumann
opened
1 year ago
2
fix condition length warning if #40
#41
philipp-baumann
closed
1 year ago
1
if dsn has more elements than 1: warning "condition has length > 1 ..."
#40
philipp-baumann
closed
1 year ago
0
Organize doc into sections
#39
philipp-baumann
closed
2 years ago
0
πβ Manage versioning via {fledge} workflow
#38
philipp-baumann
closed
1 year ago
1
π Collaborate with SpectroChemPy
#37
philipp-baumann
closed
8 months ago
0
𧱠Helper to extract final spectra as matrix
#36
philipp-baumann
opened
2 years ago
4
refactor/rename to only have parse_opus()
#35
philipp-baumann
closed
2 years ago
0
Bruker tango
#34
ThomasKnecht
closed
2 years ago
3
𧱠Helper to store parsed data in zarr data collection
#33
philipp-baumann
closed
10 months ago
2
Implement high-level interface `read_opus()`
#32
philipp-baumann
closed
2 years ago
2
Multiple DSN support and progress bar
#31
pierreroudier
closed
2 years ago
4
informative error for unknown blocks
#30
philipp-baumann
closed
2 years ago
4
πβDefine lifecycle
#29
philipp-baumann
closed
10 months ago
1
Add functionality for different dsn
#28
ThomasKnecht
closed
2 years ago
1
Introduce top-level `read_opus()`
#27
philipp-baumann
closed
1 year ago
25
π Organize the function reference into sections/topics
#26
philipp-baumann
closed
8 months ago
0
Adding a function to read raw string (without having to download the binary file)
#25
pierreroudier
closed
2 years ago
21
add additional block type distinction
#24
ThomasKnecht
closed
2 years ago
0
π Upon discussion: how to implement parallelized/chunked reading
#23
philipp-baumann
closed
1 year ago
10
π Draft intro vignette
#22
philipp-baumann
closed
1 year ago
1
Hack the header
#21
ThomasKnecht
closed
2 years ago
0
𧱠Helpers to filter spectra block types to extract
#20
philipp-baumann
closed
1 year ago
1
πβ Check if is OPUS file
#19
philipp-baumann
closed
10 months ago
0
πβThink about the data structure for tests
#18
philipp-baumann
closed
10 months ago
1
π Consider ROpenSci publishing
#17
philipp-baumann
opened
2 years ago
0
π Create a nice logo for the package
#16
philipp-baumann
closed
1 year ago
1
delete old opus reader
#15
ThomasKnecht
closed
2 years ago
1
delete old opus reader file
#14
ThomasKnecht
closed
2 years ago
1
π Add unit tests for the functions
#13
philipp-baumann
closed
10 months ago
0
πβ Tests on the fly for parsing
#12
philipp-baumann
closed
10 months ago
1
add global.R
#11
philipp-baumann
closed
2 years ago
1
unlist the parameters (lift one level up)
#10
philipp-baumann
closed
2 years ago
1
π Create documentation
#9
philipp-baumann
closed
1 year ago
1
add functionality for wavenumber
#8
ThomasKnecht
closed
2 years ago
0
Iterate over multiple connections and close them at once
#7
philipp-baumann
closed
2 years ago
1
Template function
#6
philipp-baumann
closed
2 years ago
1
create connection upstream of `read_header` and close it after all parsing
#5
philipp-baumann
closed
2 years ago
1
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