Closed joshuacwnewton closed 11 months ago
We will also need to update the labeling convention
I've updated the label value to use 60
, as per the comment on the issue. I will also be using this value in the tutorial.
I'm going to merge this PR and create a pre-release, because not having the available labels is making https://github.com/spinalcordtoolbox/spinalcordtoolbox/pull/4250 more difficult to review.
This won't be the actual PAM50 release (just a pre-release for review purposes) -- we will create the proper PAM50 release once the outstanding PAM50 spinal level changes have been merged.
These changes will enable lumbar registration by adding a new cauda equinea label (
60
) to each of the three currently-used label files, to be used as an inferior landmark during registration.Each of these files corresponds to one of three
sct_register_to_template
options (-l
,-ldisc
,-lspinal
).The label was added using FSLeyes:
1
and "Fill value" to60
.[70, 70, 40]
(this corresponds to the lowermost slice of the newly-extendedPAM50_cord.nii.gz
file)(Side note: The file size increase is quite dramatic for 2 of the 3 files. I used the same FSLeyes-based approach for all three files. However, I will point out that all 3 files are now at about the same file size (85K), so maybe the 2 files were compressed beforehand somehow? I don't quite understand...)
Fixes #26.