Closed valosekj closed 8 months ago
This PR adds PAM50_rootlets.nii.gz to PAM50/template. PAM50_rootlets.nii.gz represents semantic (i.e., level-specific) segmentation of dorsal nerve rootlets C2-C8 (see Fig10 in https://arxiv.org/pdf/2402.00724.pdf)
PAM50_rootlets.nii.gz
PAM50/template
The rootlets were segmented using the following model: https://github.com/ivadomed/model-spinal-rootlets/releases/tag/r20240129
Commands to check PAM50_rootlets.nii.gz:
cd ~/code/PAM50 git fetch git checkout jv/add_PAM50_rootlets cd template fsleyes PAM50_t2.nii.gz PAM50_rootlets.nii.gz -cm random
Preprint: https://arxiv.org/abs/2402.00724
Related: https://github.com/spinalcordtoolbox/spinalcordtoolbox/issues/4351
This PR adds
PAM50_rootlets.nii.gz
toPAM50/template
.PAM50_rootlets.nii.gz
represents semantic (i.e., level-specific) segmentation of dorsal nerve rootlets C2-C8 (see Fig10 in https://arxiv.org/pdf/2402.00724.pdf)The rootlets were segmented using the following model: https://github.com/ivadomed/model-spinal-rootlets/releases/tag/r20240129
Commands to check
PAM50_rootlets.nii.gz
:Preprint: https://arxiv.org/abs/2402.00724
Related: https://github.com/spinalcordtoolbox/spinalcordtoolbox/issues/4351