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spinalcordtoolbox / disc-labeling-hourglass

Labeling of intervertebral discs using the Hourglass deep learning architecture.
GNU Lesser General Public License v2.1
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Project hourglass discs coordinates on the spinal cord #2

Closed NathanMolinier closed 1 year ago

NathanMolinier commented 1 year ago

Description

Currently, the sct_label_vertebrae function used in the spinalcordtoolbox output discs labels along the spinal cord, however, the hourglass is trained to output disc labels on the posterior tip of the discs.

sct_label_vertebrae hourglass
Capture d’écran 2023-03-22 à 18 11 13 Capture d’écran 2023-03-22 à 18 11 00

Issue

Therefore, to be fair in the results comparison, discs labels should all be projected along the spinal cord. Is there a way to do that currently in sct ? @jcohenadad @benjamindeleener

Related issue

#3395

jcohenadad commented 1 year ago

Therefore, to be fair in the results comparison, discs labels should all be projected along the spinal cord. Is there a way to do that currently in sct ? @jcohenadad @benjamindeleener

discussion thread: https://github.com/spinalcordtoolbox/spinalcordtoolbox/issues/3395

NathanMolinier commented 1 year ago

The new option -project-centerline is now available with the function sct_label_utils