When using manual-correction.py -add-seg-only to copy the source segmentations (i.e., automatically generated (e.g., by sct_deepseg_sc or SCIseg) and visually verified in HTML QC) to the final git-annex dataset, manual-correction.py generates the following JSON sidecar containing "Name": "Manual", for example:
When using
manual-correction.py -add-seg-only
to copy the source segmentations (i.e., automatically generated (e.g., bysct_deepseg_sc
or SCIseg) and visually verified in HTML QC) to the final git-annex dataset,manual-correction.py
generates the following JSON sidecar containing"Name": "Manual"
, for example:But since the segmentations were generated automatically, e.g., by
sct_deepseg_sc
or SCIseg, the JSON should rather look like:Related: https://github.com/spinalcordtoolbox/manual-correction/pull/76, https://github.com/spinalcordtoolbox/manual-correction/pull/80