After experiencing #83, I re-run the command, but this time, labels were already present for the first subject (Marseille1). As a result, it skipped it, which is not what I expected:
Terminal output
```console
julien-macbook:~/code/coil-qc-code $ python ~/code/manual-correction/manual_correction.py -path-img data -path-out data/derivatives/labels -config config_labels.yml
----------------------------------------------------------------------------------------------------
Parsing of arguments:
Input folder ('-path-img') .............. /Users/julien/code/coil-qc-code/data
Label folder ('-path-label') .............. /Users/julien/code/coil-qc-code/data/derivatives/labels
Output folder ('-path-out') ............. /Users/julien/code/coil-qc-code/data/derivatives/labels
----------------------------------------------------------------------------------------------------
Creating new folder: /Users/julien/code/coil-qc-code/data/derivatives/labels
If you are creating label(s) from scratch, ignore the following message.
The following label files are missing:
['/Users/julien/code/coil-qc-code/data/derivatives/labels/sub-MGH1/anat/sub-MGH1_UNIT1_label-disc.nii.gz', '/Users/julien/code/coil-qc-code/data/derivatives/labels/sub-MNI1/anat/sub-MNI1_UNIT1_label-disc.nii.gz', '/Users/julien/code/coil-qc-code/data/derivatives/labels/sub-MPI1/anat/sub-MPI1_UNIT1_label-disc.nii.gz', '/Users/julien/code/coil-qc-code/data/derivatives/labels/sub-NTNU1/anat/sub-NTNU1_UNIT1_label-disc.nii.gz', '/Users/julien/code/coil-qc-code/data/derivatives/labels/sub-NYU1/anat/sub-NYU1_UNIT1_label-disc.nii.gz', '/Users/julien/code/coil-qc-code/data/derivatives/labels/sub-UCL1/anat/sub-UCL1_UNIT1_label-disc.nii.gz']
Please check that the used suffix ['_label-disc'] is correct. If not, you can provide custom suffix using '-suffix-files-' flags.
Also check that the path specified by the '-path-label' flag points to the folder with the labels.
Enter your name (Firstname Lastname). It will be used to generate a json sidecar with each corrected file: Julien Cohen-Adad
FILES_LABEL: 0%| | 0/6 [00:00
After experiencing #83, I re-run the command, but this time, labels were already present for the first subject (Marseille1). As a result, it skipped it, which is not what I expected:
Terminal output
```console julien-macbook:~/code/coil-qc-code $ python ~/code/manual-correction/manual_correction.py -path-img data -path-out data/derivatives/labels -config config_labels.yml ---------------------------------------------------------------------------------------------------- Parsing of arguments: Input folder ('-path-img') .............. /Users/julien/code/coil-qc-code/data Label folder ('-path-label') .............. /Users/julien/code/coil-qc-code/data/derivatives/labels Output folder ('-path-out') ............. /Users/julien/code/coil-qc-code/data/derivatives/labels ---------------------------------------------------------------------------------------------------- Creating new folder: /Users/julien/code/coil-qc-code/data/derivatives/labels If you are creating label(s) from scratch, ignore the following message. The following label files are missing: ['/Users/julien/code/coil-qc-code/data/derivatives/labels/sub-MGH1/anat/sub-MGH1_UNIT1_label-disc.nii.gz', '/Users/julien/code/coil-qc-code/data/derivatives/labels/sub-MNI1/anat/sub-MNI1_UNIT1_label-disc.nii.gz', '/Users/julien/code/coil-qc-code/data/derivatives/labels/sub-MPI1/anat/sub-MPI1_UNIT1_label-disc.nii.gz', '/Users/julien/code/coil-qc-code/data/derivatives/labels/sub-NTNU1/anat/sub-NTNU1_UNIT1_label-disc.nii.gz', '/Users/julien/code/coil-qc-code/data/derivatives/labels/sub-NYU1/anat/sub-NYU1_UNIT1_label-disc.nii.gz', '/Users/julien/code/coil-qc-code/data/derivatives/labels/sub-UCL1/anat/sub-UCL1_UNIT1_label-disc.nii.gz'] Please check that the used suffix ['_label-disc'] is correct. If not, you can provide custom suffix using '-suffix-files-' flags. Also check that the path specified by the '-path-label' flag points to the folder with the labels. Enter your name (Firstname Lastname). It will be used to generate a json sidecar with each corrected file: Julien Cohen-Adad FILES_LABEL: 0%| | 0/6 [00:00Why skipping it?