Closed lrouhier closed 5 years ago
@lrouhier to rule out the possibility that the error has been fixed in recent versions of SCT, could you please create a container of SCT's master branch and try again with batch_processing under docker?
I will try that.
@lrouhier any update?
There are no image for the container with the master branch I'm trying to create one.
yes, that's precisely what i asked here ;-)
@lrouhier any update?
With V4.0.0-beta5 (i wanted to try with the last stable release) There is no error. I think we can close the issue.
Description
batch_processing.sh return an error when running /home/sct/sct_4.0.0-beta.0/scripts/sct_process_segmentation.py -i t2_seg.nii.gz -p shape
Steps to Reproduce
SCT V beta 4.0.0 on docker toolbox (docker pull)
execute ./batch_processing.sh
Expected behavior: apply different fonction without problem
Actual behavior: stops when running sct_process_segmentation and yield the following error
IndexError: index 235 is out of bounds for axis 0 with size 235
full error here