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spinalcordtoolbox / sct_docker

Docker distribution of Spinal Cord Toolbox
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sct_label_vertebrae seems wrong #53

Open zgm0407 opened 4 years ago

zgm0407 commented 4 years ago

Description

sct_label_vertebrae woks well overall, but it seemed something wrong with few case in which 2 labels for 3 verts.

Steps to Reproduce

  1. Context (system versions) docker sct_4.2.1

  2. sct_label_vertebrae -i t2_r.nii.gz -s t2_seg0.nii.gz -c t2 -initlabel label_c2c3.nii.gz -qc "/home/sct/docker_shared/MR202009_qc/t2_label_qc" [t2_r.nii.gz](https://github.com/neuropoly/sct_docker/files/5277306/t2_r.nii.gz) [t2_seg0.nii.gz](https://github.com/neuropoly/sct_docker/files/5277307/t2_seg0.nii.gz) [label_c2c3.nii.gz](https://github.com/neuropoly/sct_docker/files/5277309/label_c2c3.nii.gz) ![label_vert](https://user-images.githubusercontent.com/58411463/94167925-a5144880-febf-11ea-88b2-59ae3db9e621.PNG)

Expected behavior:

Actual behavior:

jcohenadad commented 4 years ago

hi, thank you for your feedback. Could you please post this in SCT's forum, which is more active. thank you