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spindro / GINN

Graph Imputation Neural Network
http://ispac.diet.uniroma1.it/
Apache License 2.0
77 stars 27 forks source link

I got this error with dgl #6

Open ghezalahmad opened 2 years ago

ghezalahmad commented 2 years ago

GINN is running on cpu

DGLError Traceback (most recent call last) ~\AppData\Local\Temp/ipykernel_16964/379948764.py in ----> 1 imputer = GINN(oh_x_tr, 2 oh_mask_tr, 3 oh_num_mask_tr, 4 oh_cat_mask_tr, 5 oh_cat_cols,

~\Miniconda3\lib\site-packages\ginn\core.py in init(self, features, mask, num_mask, cat_mask, oh_cat_cols, numerical_columns, categorical_columns, embedding_dim, activation, dropout, percentile, distance_metric, weight_missing, graph, skip, glob_attr) 96 97 if graph: ---> 98 g.from_networkx(nxg) 99 if skip: 100 f = dgl.DGLGraph()

~\Miniconda3\lib\site-packages\dgl\heterograph.py in from_networkx(self, nx_graph, node_attrs, edge_attrs) 5690 which will return a new graph created from the networkx graph. 5691 """ -> 5692 raise DGLError('DGLGraph.from_networkx is deprecated. Please call the following\n\n' 5693 '\t dgl.from_networkx(nx_graph, node_attrs, edge_attrs)\n\n' 5694 ', which creates a new DGLGraph from the networkx graph.')

DGLError: DGLGraph.from_networkx is deprecated. Please call the following

 dgl.from_networkx(nx_graph, node_attrs, edge_attrs)

, which creates a new DGLGraph from the networkx graph.

spindro commented 2 years ago

Hi,

You are probably using a newer version of DGL. In fact, the function you are calling is deprecated. Try using an older version. Alternatively, you can find the newer version of that function.

All the best,

Indro

On Thu, 9 Dec 2021, 12:54 Ghezal Ahmad Zia, @.***> wrote:

GINN is running on cpu

DGLError Traceback (most recent call last) ~\AppData\Local\Temp/ipykernel_16964/379948764.py in ----> 1 imputer = GINN(oh_x_tr, 2 oh_mask_tr, 3 oh_num_mask_tr, 4 oh_cat_mask_tr, 5 oh_cat_cols,

~\Miniconda3\lib\site-packages\ginn\core.py in init(self, features, mask, num_mask, cat_mask, oh_cat_cols, numerical_columns, categorical_columns, embedding_dim, activation, dropout, percentile, distance_metric, weight_missing, graph, skip, glob_attr) 96 97 if graph: ---> 98 g.from_networkx(nxg) 99 if skip: 100 f = dgl.DGLGraph()

~\Miniconda3\lib\site-packages\dgl\heterograph.py in from_networkx(self, nx_graph, node_attrs, edge_attrs) 5690 which will return a new graph created from the networkx graph. 5691 """ -> 5692 raise DGLError('DGLGraph.from_networkx is deprecated. Please call the following\n\n' 5693 '\t dgl.from_networkx(nx_graph, node_attrs, edge_attrs)\n\n' 5694 ', which creates a new DGLGraph from the networkx graph.')

DGLError: DGLGraph.from_networkx is deprecated. Please call the following

dgl.from_networkx(nx_graph, node_attrs, edge_attrs)

, which creates a new DGLGraph from the networkx graph.

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ghezalahmad commented 2 years ago

Which version of DGL is used in this app? or how to downgrade it? Can you please give some information in detail?

maianhpuco commented 1 year ago

Hi @spindro, I 've got the same issue. Can you provide the version of DGL so I can install your package correctly?

Coding511 commented 1 year ago

@ghezalahmad sir did you find the solution?