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spine-generic / data-multi-subject

Multi-subject data for the Spine Generic project
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Add `AcquisitionDuration` in JSON metadata for the T2star scans #111

Closed jcohenadad closed 2 years ago

jcohenadad commented 2 years ago

See https://github.com/sct-pipeline/gm-challenge-data/issues/25 for context

alexfoias commented 2 years ago

@jcohenadad I tried to find any persitent information about the specifications for AcquisitionDuration on https://neurostars.org/search?q=Acquisition%20duration%20tag%3Abids and https://github.com/bids-standard/bids-specification/search?q=acquisitionduration.

alexfoias commented 2 years ago

@jcohenadad I will start populating AcquisitionDuration in JSON metadata for the T2star scans.

jcohenadad commented 2 years ago

@jcohenadad I will start populating AcquisitionDuration in JSON metadata for the T2star scans.

thank you. Just make sure you document where you got the information so other people can double check

alexfoias commented 2 years ago

As per the documentation for AcquisitionDuration: https://bids-specification.readthedocs.io/en/stable/04-modality-specific-files/01-magnetic-resonance-imaging-data.html#other-recommended-metadata Screen Shot 2022-01-11 at 10 32 24 AM

alexfoias commented 2 years ago

I ran a script to see if AcquisitionDuration, RepetitionTime, VolumeTiming, SliceTiming are available in the JSON metadata for *_T2star.json. I couldn't find AcquisitionDuration for any of the scans. I will manually check for the data that we have in DCM format.

Subject | RepetitionTime | AcquisitionDuration | VolumeTiming | SliceTiming -- | -- | -- | -- | -- sub-amu01 | 0.6 | N | N | N sub-amu02 | 0.6 | N | N | N sub-amu03 | 0.6 | N | N | N sub-amu04 | 0.6 | N | N | N sub-amu05 | 0.6 | N | N | N sub-balgrist01 | 0.6 | N | N | N sub-balgrist02 | 0.6 | N | N | N sub-balgrist03 | 0.6 | N | N | N sub-balgrist04 | 0.6 | N | N | N sub-balgrist05 | 0.6 | N | N | N sub-balgrist06 | 0.6 | N | N | N sub-barcelona01 | 0.6 | N | N | N sub-barcelona02 | 0.6 | N | N | N sub-barcelona03 | 0.6 | N | N | N sub-barcelona04 | 0.6 | N | N | N sub-barcelona05 | 0.6 | N | N | N sub-barcelona06 | 0.6 | N | N | N sub-beijingGE01 | 0.6 | N | N | [0.28, 0.56, 0.24, 0.52, 0.2, 0.48, 0.16, 0.44, 0.12, 0.4, 0.08, 0.36, 0.04, 0.32, 0] sub-beijingGE02 | 0.6 | N | N | [0.28, 0.56, 0.24, 0.52, 0.2, 0.48, 0.16, 0.44, 0.12, 0.4, 0.08, 0.36, 0.04, 0.32, 0] sub-beijingGE03 | 0.6 | N | N | [0.28, 0.56, 0.24, 0.52, 0.2, 0.48, 0.16, 0.44, 0.12, 0.4, 0.08, 0.36, 0.04, 0.32, 0] sub-beijingGE04 | 0.6 | N | N | [0.28, 0.56, 0.24, 0.52, 0.2, 0.48, 0.16, 0.44, 0.12, 0.4, 0.08, 0.36, 0.04, 0.32, 0] sub-beijingPrisma01 | 0.6 | N | N | N sub-beijingPrisma02 | 0.6 | N | N | [0, 0.32812, 0.04688, 0.375, 0.09375, 0.40625, 0.125, 0.45312, 0.17188, 0.48438, 0.20312, 0.53125, 0.25, 0.5625, 0.28125] sub-beijingPrisma03 | 0.6 | N | N | [0, 0.32812, 0.04688, 0.35938, 0.07812, 0.40625, 0.125, 0.45312, 0.17188, 0.48438, 0.20312, 0.53125, 0.25, 0.5625, 0.28125] sub-beijingPrisma04 | 0.6 | N | N | [0, 0.3125, 0.03125, 0.35938, 0.07812, 0.40625, 0.125, 0.4375, 0.15625, 0.48438, 0.20312, 0.51562, 0.23438, 0.5625, 0.28125] sub-beijingPrisma05 | 0.6 | N | N | [0, 0.3125, 0.03125, 0.35938, 0.07812, 0.39062, 0.10938, 0.4375, 0.15625, 0.46875, 0.1875, 0.51562, 0.23438, 0.54688, 0.28125] sub-beijingVerio01 | 0.6 | N | N | [0, 0.3125, 0.03125, 0.35938, 0.07812, 0.39062, 0.10938, 0.4375, 0.15625, 0.46875, 0.1875, 0.51562, 0.23438, 0.5625, 0.28125] sub-beijingVerio02 | 0.6 | N | N | [0, 0.3125, 0.03125, 0.35938, 0.07812, 0.39062, 0.10938, 0.4375, 0.15625, 0.48438, 0.20312, 0.51562, 0.23438, 0.5625, 0.28125] sub-beijingVerio03 | 0.6 | N | N | [0, 0.3125, 0.03125, 0.35938, 0.07812, 0.39062, 0.125, 0.4375, 0.15625, 0.48438, 0.20312, 0.51562, 0.23438, 0.5625, 0.28125] sub-beijingVerio04 | 0.6 | N | N | [0, 0.32812, 0.03125, 0.35938, 0.07812, 0.40625, 0.125, 0.4375, 0.15625, 0.48438, 0.20312, 0.51562, 0.23438, 0.5625, 0.28125] sub-brnoCeitec01 | 0.6 | N | N | N sub-brnoCeitec02 | 0.6 | N | N | N sub-brnoCeitec03 | 0.6 | N | N | N sub-brnoCeitec04 | 0.6 | N | N | N sub-brnoCeitec05 | 0.6 | N | N | N sub-brnoCeitec06 | 0.6 | N | N | N sub-brnoUhb01 | 0.6 | N | N | N sub-brnoUhb02 | 0.6 | N | N | N sub-brnoUhb03 | 0.6 | N | N | N sub-brnoUhb04 | 0.6 | N | N | N sub-brnoUhb05 | 0.6 | N | N | N sub-brnoUhb06 | 0.6 | N | N | N sub-brnoUhb07 | 0.6 | N | N | N sub-brnoUhb08 | 0.6 | N | N | N sub-cardiff01 | 0.6 | N | N | N sub-cardiff02 | 0.6 | N | N | N sub-cardiff03 | 0.6 | N | N | N sub-cardiff04 | 0.6 | N | N | N sub-cardiff05 | 0.6 | N | N | N sub-cardiff06 | 0.6 | N | N | N sub-cmrra01 | 0.6 | N | N | N sub-cmrra02 | 0.6 | N | N | N sub-cmrra03 | 0.6 | N | N | N sub-cmrra04 | 0.6 | N | N | N sub-cmrra05 | 0.6 | N | N | N sub-cmrra06 | 0.6 | N | N | N sub-cmrrb01 | 0.6 | N | N | N sub-cmrrb02 | 0.6 | N | N | N sub-cmrrb03 | 0.6 | N | N | N sub-cmrrb04 | 0.6 | N | N | N sub-cmrrb05 | 0.6 | N | N | N sub-cmrrb06 | 0.6 | N | N | N sub-cmrrb07 | 0.6 | N | N | N sub-dresden01 | 0.6 | N | N | N sub-dresden02 | 0.6 | N | N | N sub-fslAchieva01 | 0.625 | N | N | N sub-fslAchieva02 | 0.625 | N | N | N sub-fslAchieva03 | 0.625 | N | N | N sub-fslAchieva04 | 0.625 | N | N | N sub-fslAchieva05 | 0.625 | N | N | N sub-fslAchieva06 | 0.625 | N | N | N sub-fslPrisma01 | 0.6 | N | N | [0, 0.32031, 0.03906, 0.35938, 0.07812, 0.39844, 0.11719, 0.4375, 0.16406, 0.47656, 0.20312, 0.52344, 0.24219, 0.5625, 0.28125] sub-fslPrisma02 | 0.6 | N | N | [0, 0.32031, 0.03906, 0.35938, 0.07812, 0.39844, 0.125, 0.44531, 0.16406, 0.48438, 0.20312, 0.52344, 0.24219, 0.5625, 0.28125] sub-fslPrisma03 | 0.6 | N | N | [0, 0.32812, 0.04688, 0.35938, 0.07812, 0.40625, 0.125, 0.4375, 0.15625, 0.48438, 0.20312, 0.53125, 0.25, 0.5625, 0.28125] sub-fslPrisma04 | 0.6 | N | N | [0, 0.32812, 0.04688, 0.35938, 0.07812, 0.40625, 0.125, 0.4375, 0.17188, 0.48438, 0.20312, 0.53125, 0.25, 0.5625, 0.28125] sub-fslPrisma05 | 0.6 | N | N | [0, 0.3125, 0.03125, 0.35938, 0.07812, 0.39062, 0.10938, 0.4375, 0.15625, 0.46875, 0.20312, 0.51562, 0.23438, 0.5625, 0.28125] sub-fslPrisma06 | 0.6 | N | N | [0, 0.32031, 0.03906, 0.35938, 0.07812, 0.39844, 0.11719, 0.4375, 0.15625, 0.47656, 0.20312, 0.52344, 0.24219, 0.5625, 0.28125] sub-geneva01 | 0.6 | N | N | N sub-geneva02 | 0.6 | N | N | N sub-geneva03 | 0.6 | N | N | N sub-geneva04 | 0.6 | N | N | N sub-geneva05 | 0.6 | N | N | N sub-geneva06 | 0.6 | N | N | N sub-hamburg01 | 0.6 | N | N | N sub-hamburg02 | 0.6 | N | N | N sub-hamburg03 | 0.6 | N | N | N sub-hamburg04 | 0.6 | N | N | N sub-hamburg05 | 0.6 | N | N | N sub-hamburg06 | 0.6 | N | N | N sub-juntendo750w01 | 0.6 | N | N | N sub-juntendo750w02 | 0.6 | N | N | N sub-juntendo750w03 | 0.6 | N | N | N sub-juntendo750w04 | 0.6 | N | N | N sub-juntendo750w05 | 0.6 | N | N | N sub-juntendo750w06 | 0.6 | N | N | N sub-mgh01 | 0.6 | N | N | N sub-mgh02 | 0.6 | N | N | N sub-mgh03 | 0.6 | N | N | N sub-mgh04 | 0.6 | N | N | N sub-mgh05 | 0.6 | N | N | N sub-mgh06 | 0.6 | N | N | N sub-milan01 | 0.6 | N | N | N sub-milan02 | 0.6 | N | N | N sub-milan03 | 0.6 | N | N | N sub-milan04 | 0.6 | N | N | N sub-milan05 | 0.6 | N | N | N sub-milan06 | 0.6 | N | N | N sub-milan07 | 0.6 | N | N | N sub-mniPilot1 | 0.6 | N | N | N sub-mniS01 | 0.6 | N | N | N sub-mniS02 | 0.6 | N | N | N sub-mniS03 | 0.6 | N | N | N sub-mniS04 | 0.6 | N | N | N sub-mniS05 | 0.6 | N | N | N sub-mniS06 | 0.6 | N | N | N sub-mniS07 | 0.6 | N | N | N sub-mniS08 | 0.6 | N | N | N sub-mniS09 | 0.6 | N | N | N sub-mountSinai01 | 0.6 | N | N | N sub-mountSinai02 | 0.6 | N | N | N sub-mountSinai03 | 0.6 | N | N | N sub-mountSinai04 | 0.6 | N | N | N sub-mountSinai05 | 0.6 | N | N | N sub-mountSinai06 | 0.6 | N | N | N sub-mpicbs01 | 0.6 | N | N | N sub-mpicbs02 | 0.6 | N | N | N sub-mpicbs03 | 0.6 | N | N | N sub-mpicbs05 | 0.6 | N | N | N sub-mpicbs06 | 0.6 | N | N | N sub-mpicbs07 | 0.6 | N | N | N sub-nottwil01 | 0.625 | N | N | N sub-nottwil02 | 0.625 | N | N | N sub-nottwil03 | 0.625 | N | N | N sub-nottwil04 | 0.625 | N | N | N sub-nottwil05 | 0.625 | N | N | N sub-nottwil06 | 0.625 | N | N | N sub-nwu01 | 0.6 | N | N | N sub-nwu02 | 0.6 | N | N | N sub-nwu03 | 0.6 | N | N | N sub-nwu04 | 0.6 | N | N | N sub-nwu05 | 0.6 | N | N | N sub-nwu06 | 0.6 | N | N | N sub-oxfordFmrib01 | 0.6 | N | N | N sub-oxfordFmrib02 | 0.6 | N | N | N sub-oxfordFmrib03 | 0.6 | N | N | N sub-oxfordFmrib04 | 0.6 | N | N | N sub-oxfordFmrib05 | 0.6 | N | N | N sub-oxfordFmrib06 | 0.6 | N | N | N sub-oxfordFmrib07 | 0.6 | N | N | N sub-oxfordFmrib08 | 0.6 | N | N | N sub-oxfordFmrib09 | 0.6 | N | N | N sub-oxfordFmrib10 | 0.6 | N | N | N sub-oxfordFmrib11 | 0.6 | N | N | N sub-oxfordOhba01 | 0.6 | N | N | N sub-oxfordOhba02 | 0.6 | N | N | N sub-oxfordOhba03 | 0.6 | N | N | N sub-oxfordOhba04 | 0.6 | N | N | N sub-oxfordOhba05 | 0.6 | N | N | N sub-pavia01 | 0.6 | N | N | N sub-pavia02 | 0.6 | N | N | N sub-pavia03 | 0.6 | N | N | N sub-pavia04 | 0.6 | N | N | N sub-pavia05 | 0.6 | N | N | N sub-pavia06 | 0.6 | N | N | N sub-perform01 | 0.6 | N | N | N sub-perform02 | 0.6 | N | N | N sub-perform03 | 0.6 | N | N | N sub-perform04 | 0.6 | N | N | N sub-perform05 | 0.6 | N | N | N sub-perform06 | 0.6 | N | N | N sub-queensland01 | 0.6 | N | N | N sub-queensland02 | 0.6 | N | N | N sub-queensland03 | 0.6 | N | N | N sub-queensland04 | 0.6 | N | N | N sub-queensland05 | 0.6 | N | N | N sub-queensland06 | 0.6 | N | N | N sub-sherbrooke01 | 0.625 | N | N | N sub-sherbrooke02 | 0.625 | N | N | N sub-sherbrooke03 | 0.625 | N | N | N sub-sherbrooke04 | 0.625 | N | N | N sub-sherbrooke05 | 0.625 | N | N | N sub-sherbrooke06 | 0.625 | N | N | N sub-sherbrooke07 | 0.625 | N | N | N sub-stanford01 | 0.6 | N | N | N sub-stanford02 | 0.6 | N | N | N sub-stanford03 | 0.6 | N | N | N sub-stanford04 | 0.6 | N | N | N sub-stanford05 | 0.6 | N | N | N sub-stanford06 | 0.6 | N | N | N sub-strasbourg01 | 0.6 | N | N | N sub-strasbourg02 | 0.6 | N | N | N sub-strasbourg03 | 0.6 | N | N | N sub-strasbourg04 | 0.6 | N | N | N sub-strasbourg05 | 0.6 | N | N | N sub-strasbourg06 | 0.6 | N | N | N sub-tehranS01 | 0.6 | N | N | N sub-tehranS02 | 0.6 | N | N | N sub-tehranS03 | 0.6 | N | N | N sub-tehranS04 | 0.6 | N | N | N sub-tehranS05 | 0.6 | N | N | N sub-tehranS06 | 0.6 | N | N | N sub-tokyo750w01 | 0.66 | N | N | N sub-tokyo750w02 | 0.66 | N | N | N sub-tokyo750w03 | 0.66 | N | N | N sub-tokyo750w04 | 0.66 | N | N | N sub-tokyo750w05 | 0.66 | N | N | N sub-tokyo750w06 | 0.66 | N | N | N sub-tokyo750w07 | 0.66 | N | N | N sub-tokyoIngenia01 | 0.625 | N | N | N sub-tokyoIngenia02 | 0.625 | N | N | N sub-tokyoIngenia03 | 0.625 | N | N | N sub-tokyoIngenia04 | 0.625 | N | N | N sub-tokyoIngenia05 | 0.625 | N | N | N sub-tokyoIngenia06 | 0.625 | N | N | N sub-tokyoIngenia07 | 0.625 | N | N | N sub-tokyoSkyra01 | 0.6 | N | N | N sub-tokyoSkyra02 | 0.6 | N | N | N sub-tokyoSkyra03 | 0.6 | N | N | N sub-tokyoSkyra04 | 0.6 | N | N | N sub-tokyoSkyra05 | 0.6 | N | N | N sub-tokyoSkyra06 | 0.6 | N | N | N sub-tokyoSkyra07 | 0.6 | N | N | N sub-ubc01 | 0.6 | N | N | N sub-ubc02 | 0.6 | N | N | N sub-ubc03 | 0.6 | N | N | N sub-ubc04 | 0.6 | N | N | N sub-ubc05 | 0.6 | N | N | N sub-ubc06 | 0.6 | N | N | N sub-ucdavis01 | 0.6 | N | N | N sub-ucdavis02 | 0.6 | N | N | N sub-ucdavis03 | 0.6 | N | N | N sub-ucdavis04 | 0.6 | N | N | N sub-ucdavis05 | 0.6 | N | N | N sub-ucdavis06 | 0.6 | N | N | N sub-ucdavis07 | 0.6 | N | N | [0.28125, 0.55469, 0.23438, 0.51562, 0.19531, 0.47656, 0.15625, 0.4375, 0.11719, 0.39844, 0.07812, 0.35938, 0.03906, 0.32031, 0] sub-ucl01 | 0.625 | N | N | N sub-ucl02 | 0.625 | N | N | N sub-ucl03 | 0.625 | N | N | N sub-ucl04 | 0.625 | N | N | N sub-ucl05 | 0.625 | N | N | N sub-ucl06 | 0.625 | N | N | N sub-unf01 | 0.6 | N | N | N sub-unf02 | 0.6 | N | N | N sub-unf03 | 0.6 | N | N | N sub-unf04 | 0.6 | N | N | N sub-unf05 | 0.6 | N | N | N sub-unf06 | 0.6 | N | N | N sub-unf07 | 0.6 | N | N | N sub-vallHebron01 | 0.6 | N | N | N sub-vallHebron02 | 0.6 | N | N | N sub-vallHebron03 | 0.6 | N | N | N sub-vallHebron04 | 0.6 | N | N | N sub-vallHebron05 | 0.6 | N | N | N sub-vallHebron06 | 0.6 | N | N | N sub-vallHebron07 | 0.6 | N | N | N sub-vuiisAchieva01 | 0.625 | N | N | N sub-vuiisAchieva02 | 0.625 | N | N | N sub-vuiisAchieva03 | 0.625 | N | N | N sub-vuiisAchieva04 | 0.625 | N | N | N sub-vuiisAchieva05 | 0.625 | N | N | N sub-vuiisAchieva06 | 0.625 | N | N | N sub-vuiisIngenia01 | 0.625 | N | N | N sub-vuiisIngenia02 | 0.625 | N | N | N sub-vuiisIngenia03 | 0.625 | N | N | N sub-vuiisIngenia04 | 0.625 | N | N | N sub-vuiisIngenia05 | 0.625 | N | N | N sub-vuiisIngenia06 | 0.625 | N | N | N
jcohenadad commented 2 years ago

Thanks @alexfoias ! It would be nice to put your script under scripts/ in this repository as it could be useful for others

jcohenadad commented 2 years ago

The other thing we need to address is that AcquisitionDuration is mutually exclusive with TR, which is a problem because we will be violating the BIDS convention. So we need to address this somehow. I've opened an issue here: https://neurostars.org/t/why-should-acquisitionduration-and-repetitiontime-be-mutually-exclusive/21153

alexfoias commented 2 years ago

Added the script here: https://github.com/spine-generic/data-multi-subject/pull/112

jcohenadad commented 2 years ago

@alexfoias could you please also display the matrix size (dim x,y), that will be informative.

alexfoias commented 2 years ago

@jcohenadad sure, I will add this info.

alexfoias commented 2 years ago

I added AcquisitionMatrixPE & ReconMatrixPE from the json sidecar. Is this what you referred as the matrix size (dim x,y) ? Otherwise I can use nibabel to get the info from the T2star.nii.gz.

Subject | RepetitionTime | AcquisitionDuration | VolumeTiming | SliceTiming | AcquisitionMatrixPE | ReconMatrixPE -- | -- | -- | -- | -- | -- | -- sub-amu01 | 0.6 | N | N | N | 448 | 448 sub-amu02 | 0.6 | N | N | N | 448 | 448 sub-amu03 | 0.6 | N | N | N | 448 | 448 sub-amu04 | 0.6 | N | N | N | 448 | 448 sub-amu05 | 0.6 | N | N | N | 448 | 448 sub-balgrist01 | 0.6 | N | N | N | 448 | 448 sub-balgrist02 | 0.6 | N | N | N | 448 | 448 sub-balgrist03 | 0.6 | N | N | N | 448 | 448 sub-balgrist04 | 0.6 | N | N | N | 448 | 448 sub-balgrist05 | 0.6 | N | N | N | 448 | 448 sub-balgrist06 | 0.6 | N | N | N | 448 | 448 sub-barcelona01 | 0.6 | N | N | N | 448 | 448 sub-barcelona02 | 0.6 | N | N | N | 448 | 448 sub-barcelona03 | 0.6 | N | N | N | 448 | 448 sub-barcelona04 | 0.6 | N | N | N | 448 | 448 sub-barcelona05 | 0.6 | N | N | N | 448 | 448 sub-barcelona06 | 0.6 | N | N | N | 448 | 448 sub-beijingGE01 | 0.6 | N | N | [0.28, 0.56, 0.24, 0.52, 0.2, 0.48, 0.16, 0.44, 0.12, 0.4, 0.08, 0.36, 0.04, 0.32, 0] | 448 | 512 sub-beijingGE02 | 0.6 | N | N | [0.28, 0.56, 0.24, 0.52, 0.2, 0.48, 0.16, 0.44, 0.12, 0.4, 0.08, 0.36, 0.04, 0.32, 0] | 448 | 512 sub-beijingGE03 | 0.6 | N | N | [0.28, 0.56, 0.24, 0.52, 0.2, 0.48, 0.16, 0.44, 0.12, 0.4, 0.08, 0.36, 0.04, 0.32, 0] | 448 | 512 sub-beijingGE04 | 0.6 | N | N | [0.28, 0.56, 0.24, 0.52, 0.2, 0.48, 0.16, 0.44, 0.12, 0.4, 0.08, 0.36, 0.04, 0.32, 0] | 448 | 512 sub-beijingPrisma01 | 0.6 | N | N | N | 448 | 448 sub-beijingPrisma02 | 0.6 | N | N | [0, 0.32812, 0.04688, 0.375, 0.09375, 0.40625, 0.125, 0.45312, 0.17188, 0.48438, 0.20312, 0.53125, 0.25, 0.5625, 0.28125] | 448 | 448 sub-beijingPrisma03 | 0.6 | N | N | [0, 0.32812, 0.04688, 0.35938, 0.07812, 0.40625, 0.125, 0.45312, 0.17188, 0.48438, 0.20312, 0.53125, 0.25, 0.5625, 0.28125] | 448 | 448 sub-beijingPrisma04 | 0.6 | N | N | [0, 0.3125, 0.03125, 0.35938, 0.07812, 0.40625, 0.125, 0.4375, 0.15625, 0.48438, 0.20312, 0.51562, 0.23438, 0.5625, 0.28125] | 448 | 448 sub-beijingPrisma05 | 0.6 | N | N | [0, 0.3125, 0.03125, 0.35938, 0.07812, 0.39062, 0.10938, 0.4375, 0.15625, 0.46875, 0.1875, 0.51562, 0.23438, 0.54688, 0.28125] | 448 | 448 sub-beijingVerio01 | 0.6 | N | N | [0, 0.3125, 0.03125, 0.35938, 0.07812, 0.39062, 0.10938, 0.4375, 0.15625, 0.46875, 0.1875, 0.51562, 0.23438, 0.5625, 0.28125] | 448 | 448 sub-beijingVerio02 | 0.6 | N | N | [0, 0.3125, 0.03125, 0.35938, 0.07812, 0.39062, 0.10938, 0.4375, 0.15625, 0.48438, 0.20312, 0.51562, 0.23438, 0.5625, 0.28125] | 448 | 448 sub-beijingVerio03 | 0.6 | N | N | [0, 0.3125, 0.03125, 0.35938, 0.07812, 0.39062, 0.125, 0.4375, 0.15625, 0.48438, 0.20312, 0.51562, 0.23438, 0.5625, 0.28125] | 448 | 448 sub-beijingVerio04 | 0.6 | N | N | [0, 0.32812, 0.03125, 0.35938, 0.07812, 0.40625, 0.125, 0.4375, 0.15625, 0.48438, 0.20312, 0.51562, 0.23438, 0.5625, 0.28125] | 448 | 448 sub-brnoCeitec01 | 0.6 | N | N | N | 448 | 448 sub-brnoCeitec02 | 0.6 | N | N | N | 448 | 448 sub-brnoCeitec03 | 0.6 | N | N | N | 448 | 448 sub-brnoCeitec04 | 0.6 | N | N | N | 448 | 448 sub-brnoCeitec05 | 0.6 | N | N | N | 448 | 448 sub-brnoCeitec06 | 0.6 | N | N | N | 448 | 448 sub-brnoUhb01 | 0.6 | N | N | N | 448 | 512 sub-brnoUhb02 | 0.6 | N | N | N | 448 | 512 sub-brnoUhb03 | 0.6 | N | N | N | 448 | 512 sub-brnoUhb04 | 0.6 | N | N | N | 448 | 512 sub-brnoUhb05 | 0.6 | N | N | N | 448 | 512 sub-brnoUhb06 | 0.6 | N | N | N | 448 | 512 sub-brnoUhb07 | 0.6 | N | N | N | 448 | 512 sub-brnoUhb08 | 0.6 | N | N | N | 448 | 512 sub-cardiff01 | 0.6 | N | N | N | 448 | 448 sub-cardiff02 | 0.6 | N | N | N | 448 | 448 sub-cardiff03 | 0.6 | N | N | N | 448 | 448 sub-cardiff04 | 0.6 | N | N | N | 448 | 448 sub-cardiff05 | 0.6 | N | N | N | 448 | 448 sub-cardiff06 | 0.6 | N | N | N | 448 | 448 sub-cmrra01 | 0.6 | N | N | N | 448 | 448 sub-cmrra02 | 0.6 | N | N | N | 448 | 448 sub-cmrra03 | 0.6 | N | N | N | 448 | 448 sub-cmrra04 | 0.6 | N | N | N | 448 | 448 sub-cmrra05 | 0.6 | N | N | N | 448 | 448 sub-cmrra06 | 0.6 | N | N | N | 448 | 448 sub-cmrrb01 | 0.6 | N | N | N | 448 | 448 sub-cmrrb02 | 0.6 | N | N | N | 448 | 448 sub-cmrrb03 | 0.6 | N | N | N | 448 | 448 sub-cmrrb04 | 0.6 | N | N | N | 448 | 448 sub-cmrrb05 | 0.6 | N | N | N | 448 | 448 sub-cmrrb06 | 0.6 | N | N | N | 448 | 448 sub-cmrrb07 | 0.6 | N | N | N | 448 | 448 sub-dresden01 | 0.6 | N | N | N | 448 | 448 sub-dresden02 | 0.6 | N | N | N | 448 | 448 sub-fslAchieva01 | 0.625 | N | N | N | 320 | 320 sub-fslAchieva02 | 0.625 | N | N | N | 320 | 320 sub-fslAchieva03 | 0.625 | N | N | N | 320 | 320 sub-fslAchieva04 | 0.625 | N | N | N | 320 | 320 sub-fslAchieva05 | 0.625 | N | N | N | 320 | 320 sub-fslAchieva06 | 0.625 | N | N | N | 320 | 320 sub-fslPrisma01 | 0.6 | N | N | [0, 0.32031, 0.03906, 0.35938, 0.07812, 0.39844, 0.11719, 0.4375, 0.16406, 0.47656, 0.20312, 0.52344, 0.24219, 0.5625, 0.28125] | 448 | 448 sub-fslPrisma02 | 0.6 | N | N | [0, 0.32031, 0.03906, 0.35938, 0.07812, 0.39844, 0.125, 0.44531, 0.16406, 0.48438, 0.20312, 0.52344, 0.24219, 0.5625, 0.28125] | 448 | 448 sub-fslPrisma03 | 0.6 | N | N | [0, 0.32812, 0.04688, 0.35938, 0.07812, 0.40625, 0.125, 0.4375, 0.15625, 0.48438, 0.20312, 0.53125, 0.25, 0.5625, 0.28125] | 448 | 448 sub-fslPrisma04 | 0.6 | N | N | [0, 0.32812, 0.04688, 0.35938, 0.07812, 0.40625, 0.125, 0.4375, 0.17188, 0.48438, 0.20312, 0.53125, 0.25, 0.5625, 0.28125] | 448 | 448 sub-fslPrisma05 | 0.6 | N | N | [0, 0.3125, 0.03125, 0.35938, 0.07812, 0.39062, 0.10938, 0.4375, 0.15625, 0.46875, 0.20312, 0.51562, 0.23438, 0.5625, 0.28125] | 448 | 448 sub-fslPrisma06 | 0.6 | N | N | [0, 0.32031, 0.03906, 0.35938, 0.07812, 0.39844, 0.11719, 0.4375, 0.15625, 0.47656, 0.20312, 0.52344, 0.24219, 0.5625, 0.28125] | 448 | 448 sub-geneva01 | 0.6 | N | N | N | 448 | 448 sub-geneva02 | 0.6 | N | N | N | 448 | 448 sub-geneva03 | 0.6 | N | N | N | 448 | 448 sub-geneva04 | 0.6 | N | N | N | 448 | 448 sub-geneva05 | 0.6 | N | N | N | 448 | 448 sub-geneva06 | 0.6 | N | N | N | 448 | 448 sub-hamburg01 | 0.6 | N | N | N | 448 | 448 sub-hamburg02 | 0.6 | N | N | N | 448 | 448 sub-hamburg03 | 0.6 | N | N | N | 448 | 448 sub-hamburg04 | 0.6 | N | N | N | 448 | 448 sub-hamburg05 | 0.6 | N | N | N | 448 | 448 sub-hamburg06 | 0.6 | N | N | N | 448 | 448 sub-juntendo750w01 | 0.6 | N | N | N | 448 | 448 sub-juntendo750w02 | 0.6 | N | N | N | 448 | 448 sub-juntendo750w03 | 0.6 | N | N | N | 448 | 448 sub-juntendo750w04 | 0.6 | N | N | N | 448 | 448 sub-juntendo750w05 | 0.6 | N | N | N | 448 | 448 sub-juntendo750w06 | 0.6 | N | N | N | 448 | 448 sub-mgh01 | 0.6 | N | N | N | 448 | 448 sub-mgh02 | 0.6 | N | N | N | 448 | 448 sub-mgh03 | 0.6 | N | N | N | 448 | 448 sub-mgh04 | 0.6 | N | N | N | 448 | 448 sub-mgh05 | 0.6 | N | N | N | 448 | 448 sub-mgh06 | 0.6 | N | N | N | 448 | 448 sub-milan01 | 0.6 | N | N | N | N | N sub-milan02 | 0.6 | N | N | N | N | N sub-milan03 | 0.6 | N | N | N | N | N sub-milan04 | 0.6 | N | N | N | N | N sub-milan05 | 0.6 | N | N | N | N | N sub-milan06 | 0.6 | N | N | N | N | N sub-milan07 | 0.6 | N | N | N | N | N sub-mniPilot1 | 0.6 | N | N | N | 448 | 448 sub-mniS01 | 0.6 | N | N | N | 448 | 448 sub-mniS02 | 0.6 | N | N | N | 448 | 448 sub-mniS03 | 0.6 | N | N | N | 448 | 448 sub-mniS04 | 0.6 | N | N | N | 448 | 448 sub-mniS05 | 0.6 | N | N | N | 448 | 448 sub-mniS06 | 0.6 | N | N | N | 448 | 448 sub-mniS07 | 0.6 | N | N | N | 448 | 448 sub-mniS08 | 0.6 | N | N | N | 448 | 448 sub-mniS09 | 0.6 | N | N | N | 448 | 448 sub-mountSinai01 | 0.6 | N | N | N | 448 | 448 sub-mountSinai02 | 0.6 | N | N | N | 448 | 448 sub-mountSinai03 | 0.6 | N | N | N | 448 | 448 sub-mountSinai04 | 0.6 | N | N | N | 448 | 448 sub-mountSinai05 | 0.6 | N | N | N | 448 | 448 sub-mountSinai06 | 0.6 | N | N | N | 448 | 448 sub-mpicbs01 | 0.6 | N | N | N | 448 | 448 sub-mpicbs02 | 0.6 | N | N | N | 448 | 448 sub-mpicbs03 | 0.6 | N | N | N | 448 | 448 sub-mpicbs05 | 0.6 | N | N | N | 448 | 448 sub-mpicbs06 | 0.6 | N | N | N | 448 | 448 sub-mpicbs07 | 0.6 | N | N | N | 448 | 448 sub-nottwil01 | 0.625 | N | N | N | N | N sub-nottwil02 | 0.625 | N | N | N | N | N sub-nottwil03 | 0.625 | N | N | N | N | N sub-nottwil04 | 0.625 | N | N | N | N | N sub-nottwil05 | 0.625 | N | N | N | N | N sub-nottwil06 | 0.625 | N | N | N | N | N sub-nwu01 | 0.6 | N | N | N | 448 | 448 sub-nwu02 | 0.6 | N | N | N | 448 | 448 sub-nwu03 | 0.6 | N | N | N | 448 | 448 sub-nwu04 | 0.6 | N | N | N | 448 | 448 sub-nwu05 | 0.6 | N | N | N | 448 | 448 sub-nwu06 | 0.6 | N | N | N | 448 | 448 sub-oxfordFmrib01 | 0.6 | N | N | N | 448 | 448 sub-oxfordFmrib02 | 0.6 | N | N | N | 448 | 448 sub-oxfordFmrib03 | 0.6 | N | N | N | 448 | 448 sub-oxfordFmrib04 | 0.6 | N | N | N | 448 | 448 sub-oxfordFmrib05 | 0.6 | N | N | N | 448 | 448 sub-oxfordFmrib06 | 0.6 | N | N | N | 448 | 448 sub-oxfordFmrib07 | 0.6 | N | N | N | 448 | 448 sub-oxfordFmrib08 | 0.6 | N | N | N | 448 | 448 sub-oxfordFmrib09 | 0.6 | N | N | N | 448 | 448 sub-oxfordFmrib10 | 0.6 | N | N | N | 448 | 448 sub-oxfordFmrib11 | 0.6 | N | N | N | 448 | 448 sub-oxfordOhba01 | 0.6 | N | N | N | 448 | 448 sub-oxfordOhba02 | 0.6 | N | N | N | 448 | 448 sub-oxfordOhba03 | 0.6 | N | N | N | 448 | 448 sub-oxfordOhba04 | 0.6 | N | N | N | 448 | 448 sub-oxfordOhba05 | 0.6 | N | N | N | 448 | 448 sub-pavia01 | 0.6 | N | N | N | 448 | 448 sub-pavia02 | 0.6 | N | N | N | 448 | 448 sub-pavia03 | 0.6 | N | N | N | 448 | 448 sub-pavia04 | 0.6 | N | N | N | 448 | 448 sub-pavia05 | 0.6 | N | N | N | 448 | 448 sub-pavia06 | 0.6 | N | N | N | 448 | 448 sub-perform01 | 0.6 | N | N | N | 448 | 448 sub-perform02 | 0.6 | N | N | N | 448 | 448 sub-perform03 | 0.6 | N | N | N | 448 | 448 sub-perform04 | 0.6 | N | N | N | 448 | 448 sub-perform05 | 0.6 | N | N | N | 448 | 448 sub-perform06 | 0.6 | N | N | N | 448 | 448 sub-queensland01 | 0.6 | N | N | N | 448 | 448 sub-queensland02 | 0.6 | N | N | N | 448 | 448 sub-queensland03 | 0.6 | N | N | N | 448 | 448 sub-queensland04 | 0.6 | N | N | N | 448 | 448 sub-queensland05 | 0.6 | N | N | N | 448 | 448 sub-queensland06 | 0.6 | N | N | N | 448 | 448 sub-sherbrooke01 | 0.625 | N | N | N | N | N sub-sherbrooke02 | 0.625 | N | N | N | N | N sub-sherbrooke03 | 0.625 | N | N | N | N | N sub-sherbrooke04 | 0.625 | N | N | N | N | N sub-sherbrooke05 | 0.625 | N | N | N | N | N sub-sherbrooke06 | 0.625 | N | N | N | N | N sub-sherbrooke07 | 0.625 | N | N | N | N | N sub-stanford01 | 0.6 | N | N | N | 448 | 448 sub-stanford02 | 0.6 | N | N | N | 448 | 448 sub-stanford03 | 0.6 | N | N | N | 448 | 448 sub-stanford04 | 0.6 | N | N | N | 448 | 448 sub-stanford05 | 0.6 | N | N | N | 448 | 448 sub-stanford06 | 0.6 | N | N | N | 448 | 448 sub-strasbourg01 | 0.6 | N | N | N | 448 | 448 sub-strasbourg02 | 0.6 | N | N | N | 448 | 448 sub-strasbourg03 | 0.6 | N | N | N | 448 | 448 sub-strasbourg04 | 0.6 | N | N | N | 448 | 448 sub-strasbourg05 | 0.6 | N | N | N | 448 | 448 sub-strasbourg06 | 0.6 | N | N | N | 448 | 448 sub-tehranS01 | 0.6 | N | N | N | 448 | 448 sub-tehranS02 | 0.6 | N | N | N | 448 | 448 sub-tehranS03 | 0.6 | N | N | N | 448 | 448 sub-tehranS04 | 0.6 | N | N | N | 448 | 448 sub-tehranS05 | 0.6 | N | N | N | 448 | 448 sub-tehranS06 | 0.6 | N | N | N | 448 | 448 sub-tokyo750w01 | 0.66 | N | N | N | 448 | 448 sub-tokyo750w02 | 0.66 | N | N | N | 448 | 448 sub-tokyo750w03 | 0.66 | N | N | N | 448 | 448 sub-tokyo750w04 | 0.66 | N | N | N | 448 | 448 sub-tokyo750w05 | 0.66 | N | N | N | 448 | 448 sub-tokyo750w06 | 0.66 | N | N | N | 448 | 448 sub-tokyo750w07 | 0.66 | N | N | N | 448 | 448 sub-tokyoIngenia01 | 0.625 | N | N | N | 320 | 320 sub-tokyoIngenia02 | 0.625 | N | N | N | 320 | 320 sub-tokyoIngenia03 | 0.625 | N | N | N | 320 | 320 sub-tokyoIngenia04 | 0.625 | N | N | N | 320 | 320 sub-tokyoIngenia05 | 0.625 | N | N | N | 320 | 320 sub-tokyoIngenia06 | 0.625 | N | N | N | 320 | 320 sub-tokyoIngenia07 | 0.625 | N | N | N | 320 | 320 sub-tokyoSkyra01 | 0.6 | N | N | N | 448 | 448 sub-tokyoSkyra02 | 0.6 | N | N | N | 448 | 448 sub-tokyoSkyra03 | 0.6 | N | N | N | 448 | 448 sub-tokyoSkyra04 | 0.6 | N | N | N | 448 | 448 sub-tokyoSkyra05 | 0.6 | N | N | N | 448 | 448 sub-tokyoSkyra06 | 0.6 | N | N | N | 448 | 448 sub-tokyoSkyra07 | 0.6 | N | N | N | 448 | 448 sub-ubc01 | 0.6 | N | N | N | 448 | 448 sub-ubc02 | 0.6 | N | N | N | 448 | 448 sub-ubc03 | 0.6 | N | N | N | 448 | 448 sub-ubc04 | 0.6 | N | N | N | 448 | 448 sub-ubc05 | 0.6 | N | N | N | 448 | 448 sub-ubc06 | 0.6 | N | N | N | 448 | 448 sub-ucdavis01 | 0.6 | N | N | N | 448 | 448 sub-ucdavis02 | 0.6 | N | N | N | 448 | 448 sub-ucdavis03 | 0.6 | N | N | N | 448 | 448 sub-ucdavis04 | 0.6 | N | N | N | 448 | 448 sub-ucdavis05 | 0.6 | N | N | N | 448 | 448 sub-ucdavis06 | 0.6 | N | N | N | 448 | 448 sub-ucdavis07 | 0.6 | N | N | [0.28125, 0.55469, 0.23438, 0.51562, 0.19531, 0.47656, 0.15625, 0.4375, 0.11719, 0.39844, 0.07812, 0.35938, 0.03906, 0.32031, 0] | 448 | 448 sub-ucl01 | 0.625 | N | N | N | N | N sub-ucl02 | 0.625 | N | N | N | N | N sub-ucl03 | 0.625 | N | N | N | N | N sub-ucl04 | 0.625 | N | N | N | N | N sub-ucl05 | 0.625 | N | N | N | N | N sub-ucl06 | 0.625 | N | N | N | N | N sub-unf01 | 0.6 | N | N | N | 448 | 448 sub-unf02 | 0.6 | N | N | N | 448 | 448 sub-unf03 | 0.6 | N | N | N | 448 | 448 sub-unf04 | 0.6 | N | N | N | 448 | 448 sub-unf05 | 0.6 | N | N | N | 448 | 448 sub-unf06 | 0.6 | N | N | N | 448 | 448 sub-unf07 | 0.6 | N | N | N | 448 | 448 sub-vallHebron01 | 0.6 | N | N | N | 448 | 448 sub-vallHebron02 | 0.6 | N | N | N | 448 | 448 sub-vallHebron03 | 0.6 | N | N | N | 448 | 448 sub-vallHebron04 | 0.6 | N | N | N | 448 | 448 sub-vallHebron05 | 0.6 | N | N | N | 448 | 448 sub-vallHebron06 | 0.6 | N | N | N | 448 | 448 sub-vallHebron07 | 0.6 | N | N | N | 448 | 448 sub-vuiisAchieva01 | 0.625 | N | N | N | 320 | 320 sub-vuiisAchieva02 | 0.625 | N | N | N | 320 | 320 sub-vuiisAchieva03 | 0.625 | N | N | N | 320 | 320 sub-vuiisAchieva04 | 0.625 | N | N | N | 320 | 320 sub-vuiisAchieva05 | 0.625 | N | N | N | 320 | 320 sub-vuiisAchieva06 | 0.625 | N | N | N | 320 | 320 sub-vuiisIngenia01 | 0.625 | N | N | N | 320 | 320 sub-vuiisIngenia02 | 0.625 | N | N | N | 320 | 320 sub-vuiisIngenia03 | 0.625 | N | N | N | 320 | 320 sub-vuiisIngenia04 | 0.625 | N | N | N | 320 | 320 sub-vuiisIngenia05 | 0.625 | N | N | N | 320 | 320 sub-vuiisIngenia06 | 0.625 | N | N | N | 320 | 320
alexfoias commented 2 years ago

@jcohenadad I compiled the AcqDuration manually comparing the protocol PDF with the TR and AcqMatrix of each scan.

I have a few issues with:

Here is a table without VolumeTiming, SliceTiming, but with AcquisitionDurationManual.

Subject | RepetitionTime | AcquisitionMatrixPE | ReconMatrixPE | AcquisitionDurationManual -- | -- | -- | -- | -- sub-amu01 | 0.6 | 448 | 448 | 290 sub-amu02 | 0.6 | 448 | 448 | 290 sub-amu03 | 0.6 | 448 | 448 | 290 sub-amu04 | 0.6 | 448 | 448 | 290 sub-amu05 | 0.6 | 448 | 448 | 290 sub-balgrist01 | 0.6 | 448 | 448 | 285 sub-balgrist02 | 0.6 | 448 | 448 | 285 sub-balgrist03 | 0.6 | 448 | 448 | 285 sub-balgrist04 | 0.6 | 448 | 448 | 285 sub-balgrist05 | 0.6 | 448 | 448 | 285 sub-balgrist06 | 0.6 | 448 | 448 | 285 sub-barcelona01 | 0.6 | 448 | 448 | 285 sub-barcelona02 | 0.6 | 448 | 448 | 285 sub-barcelona03 | 0.6 | 448 | 448 | 285 sub-barcelona04 | 0.6 | 448 | 448 | 285 sub-barcelona05 | 0.6 | 448 | 448 | 285 sub-barcelona06 | 0.6 | 448 | 448 | 285 sub-beijingGE01 | 0.6 | 448 | 512 | GE sub-beijingGE02 | 0.6 | 448 | 512 | GE sub-beijingGE03 | 0.6 | 448 | 512 | GE sub-beijingGE04 | 0.6 | 448 | 512 | GE sub-beijingPrisma01 | 0.6 | 448 | 448 | 285 sub-beijingPrisma02 | 0.6 | 448 | 448 | 285 sub-beijingPrisma03 | 0.6 | 448 | 448 | 285 sub-beijingPrisma04 | 0.6 | 448 | 448 | 285 sub-beijingPrisma05 | 0.6 | 448 | 448 | 285 sub-beijingVerio01 | 0.6 | 448 | 448 | 290 sub-beijingVerio02 | 0.6 | 448 | 448 | 290 sub-beijingVerio03 | 0.6 | 448 | 448 | 290 sub-beijingVerio04 | 0.6 | 448 | 448 | 290 sub-brnoCeitec01 | 0.6 | 448 | 448 | 285 sub-brnoCeitec02 | 0.6 | 448 | 448 | 285 sub-brnoCeitec03 | 0.6 | 448 | 448 | 285 sub-brnoCeitec04 | 0.6 | 448 | 448 | 285 sub-brnoCeitec05 | 0.6 | 448 | 448 | 285 sub-brnoCeitec06 | 0.6 | 448 | 448 | 285 sub-brnoUhb01 | 0.6 | 448 | 512 | GE sub-brnoUhb02 | 0.6 | 448 | 512 | GE sub-brnoUhb03 | 0.6 | 448 | 512 | GE sub-brnoUhb04 | 0.6 | 448 | 512 | GE sub-brnoUhb05 | 0.6 | 448 | 512 | GE sub-brnoUhb06 | 0.6 | 448 | 512 | GE sub-brnoUhb07 | 0.6 | 448 | 512 | GE sub-brnoUhb08 | 0.6 | 448 | 512 | GE sub-cardiff01 | 0.6 | 448 | 448 | 285 sub-cardiff02 | 0.6 | 448 | 448 | 285 sub-cardiff03 | 0.6 | 448 | 448 | 285 sub-cardiff04 | 0.6 | 448 | 448 | 285 sub-cardiff05 | 0.6 | 448 | 448 | 285 sub-cardiff06 | 0.6 | 448 | 448 | 285 sub-cmrra01 | 0.6 | 448 | 448 | 285 sub-cmrra02 | 0.6 | 448 | 448 | 285 sub-cmrra03 | 0.6 | 448 | 448 | 285 sub-cmrra04 | 0.6 | 448 | 448 | 285 sub-cmrra05 | 0.6 | 448 | 448 | 285 sub-cmrra06 | 0.6 | 448 | 448 | 285 sub-cmrrb01 | 0.6 | 448 | 448 | 285 sub-cmrrb02 | 0.6 | 448 | 448 | 285 sub-cmrrb03 | 0.6 | 448 | 448 | 285 sub-cmrrb04 | 0.6 | 448 | 448 | 285 sub-cmrrb05 | 0.6 | 448 | 448 | 285 sub-cmrrb06 | 0.6 | 448 | 448 | 285 sub-cmrrb07 | 0.6 | 448 | 448 | 285 sub-dresden01 | 0.6 | 448 | 448 | 285 sub-dresden02 | 0.6 | 448 | 448 | 285 sub-fslAchieva01 | 0.625 | 320 | 320 | 242.5 sub-fslAchieva02 | 0.625 | 320 | 320 | 242.5 sub-fslAchieva03 | 0.625 | 320 | 320 | 242.5 sub-fslAchieva04 | 0.625 | 320 | 320 | 242.5 sub-fslAchieva05 | 0.625 | 320 | 320 | 242.5 sub-fslAchieva06 | 0.625 | 320 | 320 | 242.5 sub-fslPrisma01 | 0.6 | 448 | 448 | 285 sub-fslPrisma02 | 0.6 | 448 | 448 | 285 sub-fslPrisma03 | 0.6 | 448 | 448 | 285 sub-fslPrisma04 | 0.6 | 448 | 448 | 285 sub-fslPrisma05 | 0.6 | 448 | 448 | 285 sub-fslPrisma06 | 0.6 | 448 | 448 | 285 sub-geneva01 | 0.6 | 448 | 448 | 285 sub-geneva02 | 0.6 | 448 | 448 | 285 sub-geneva03 | 0.6 | 448 | 448 | 285 sub-geneva04 | 0.6 | 448 | 448 | 285 sub-geneva05 | 0.6 | 448 | 448 | 285 sub-geneva06 | 0.6 | 448 | 448 | 285 sub-hamburg01 | 0.6 | 448 | 448 | 285 sub-hamburg02 | 0.6 | 448 | 448 | 285 sub-hamburg03 | 0.6 | 448 | 448 | 285 sub-hamburg04 | 0.6 | 448 | 448 | 285 sub-hamburg05 | 0.6 | 448 | 448 | 285 sub-hamburg06 | 0.6 | 448 | 448 | 285 sub-juntendo750w01 | 0.6 | 448 | 448 | GE sub-juntendo750w02 | 0.6 | 448 | 448 | GE sub-juntendo750w03 | 0.6 | 448 | 448 | GE sub-juntendo750w04 | 0.6 | 448 | 448 | GE sub-juntendo750w05 | 0.6 | 448 | 448 | GE sub-juntendo750w06 | 0.6 | 448 | 448 | GE sub-mgh01 | 0.6 | 448 | 448 | 285 sub-mgh02 | 0.6 | 448 | 448 | 285 sub-mgh03 | 0.6 | 448 | 448 | 285 sub-mgh04 | 0.6 | 448 | 448 | 285 sub-mgh05 | 0.6 | 448 | 448 | 285 sub-mgh06 | 0.6 | 448 | 448 | 285 sub-milan01 | 0.6 | N | N | 285? (Missing AcqMatrix) sub-milan02 | 0.6 | N | N | 285? (Missing AcqMatrix) sub-milan03 | 0.6 | N | N | 285? (Missing AcqMatrix) sub-milan04 | 0.6 | N | N | 285? (Missing AcqMatrix) sub-milan05 | 0.6 | N | N | 285? (Missing AcqMatrix) sub-milan06 | 0.6 | N | N | 285? (Missing AcqMatrix) sub-milan07 | 0.6 | N | N | 285? (Missing AcqMatrix) sub-mniPilot1 | 0.6 | 448 | 448 | 285 sub-mniS01 | 0.6 | 448 | 448 | 285 sub-mniS02 | 0.6 | 448 | 448 | 285 sub-mniS03 | 0.6 | 448 | 448 | 285 sub-mniS04 | 0.6 | 448 | 448 | 285 sub-mniS05 | 0.6 | 448 | 448 | 285 sub-mniS06 | 0.6 | 448 | 448 | 285 sub-mniS07 | 0.6 | 448 | 448 | 285 sub-mniS08 | 0.6 | 448 | 448 | 285 sub-mniS09 | 0.6 | 448 | 448 | 285 sub-mountSinai01 | 0.6 | 448 | 448 | 285 sub-mountSinai02 | 0.6 | 448 | 448 | 285 sub-mountSinai03 | 0.6 | 448 | 448 | 285 sub-mountSinai04 | 0.6 | 448 | 448 | 285 sub-mountSinai05 | 0.6 | 448 | 448 | 285 sub-mountSinai06 | 0.6 | 448 | 448 | 285 sub-mpicbs01 | 0.6 | 448 | 448 | 285 sub-mpicbs02 | 0.6 | 448 | 448 | 285 sub-mpicbs03 | 0.6 | 448 | 448 | 285 sub-mpicbs05 | 0.6 | 448 | 448 | 285 sub-mpicbs06 | 0.6 | 448 | 448 | 285 sub-mpicbs07 | 0.6 | 448 | 448 | 285 sub-nottwil01 | 0.625 | N | N | 242.5? (Missing AcqMatrix) sub-nottwil02 | 0.625 | N | N | 242.5? (Missing AcqMatrix) sub-nottwil03 | 0.625 | N | N | 242.5? (Missing AcqMatrix) sub-nottwil04 | 0.625 | N | N | 242.5? (Missing AcqMatrix) sub-nottwil05 | 0.625 | N | N | 242.5? (Missing AcqMatrix) sub-nottwil06 | 0.625 | N | N | 242.5? (Missing AcqMatrix) sub-nwu01 | 0.6 | 448 | 448 | 285 sub-nwu02 | 0.6 | 448 | 448 | 285 sub-nwu03 | 0.6 | 448 | 448 | 285 sub-nwu04 | 0.6 | 448 | 448 | 285 sub-nwu05 | 0.6 | 448 | 448 | 285 sub-nwu06 | 0.6 | 448 | 448 | 285 sub-oxfordFmrib01 | 0.6 | 448 | 448 | 285 sub-oxfordFmrib02 | 0.6 | 448 | 448 | 285 sub-oxfordFmrib03 | 0.6 | 448 | 448 | 285 sub-oxfordFmrib04 | 0.6 | 448 | 448 | 285 sub-oxfordFmrib05 | 0.6 | 448 | 448 | 285 sub-oxfordFmrib06 | 0.6 | 448 | 448 | 285 sub-oxfordFmrib07 | 0.6 | 448 | 448 | 285 sub-oxfordFmrib08 | 0.6 | 448 | 448 | 285 sub-oxfordFmrib09 | 0.6 | 448 | 448 | 285 sub-oxfordFmrib10 | 0.6 | 448 | 448 | 285 sub-oxfordFmrib11 | 0.6 | 448 | 448 | 285 sub-oxfordOhba01 | 0.6 | 448 | 448 | 285 sub-oxfordOhba02 | 0.6 | 448 | 448 | 285 sub-oxfordOhba03 | 0.6 | 448 | 448 | 285 sub-oxfordOhba04 | 0.6 | 448 | 448 | 285 sub-oxfordOhba05 | 0.6 | 448 | 448 | 285 sub-pavia01 | 0.6 | 448 | 448 | 285 sub-pavia02 | 0.6 | 448 | 448 | 285 sub-pavia03 | 0.6 | 448 | 448 | 285 sub-pavia04 | 0.6 | 448 | 448 | 285 sub-pavia05 | 0.6 | 448 | 448 | 285 sub-pavia06 | 0.6 | 448 | 448 | 285 sub-perform01 | 0.6 | 448 | 448 | GE sub-perform02 | 0.6 | 448 | 448 | GE sub-perform03 | 0.6 | 448 | 448 | GE sub-perform04 | 0.6 | 448 | 448 | GE sub-perform05 | 0.6 | 448 | 448 | GE sub-perform06 | 0.6 | 448 | 448 | GE sub-queensland01 | 0.6 | 448 | 448 | 285 sub-queensland02 | 0.6 | 448 | 448 | 285 sub-queensland03 | 0.6 | 448 | 448 | 285 sub-queensland04 | 0.6 | 448 | 448 | 285 sub-queensland05 | 0.6 | 448 | 448 | 285 sub-queensland06 | 0.6 | 448 | 448 | 285 sub-sherbrooke01 | 0.625 | N | N | 242.5? (Missing AcqMatrix) sub-sherbrooke02 | 0.625 | N | N | 242.5? (Missing AcqMatrix) sub-sherbrooke03 | 0.625 | N | N | 242.5? (Missing AcqMatrix) sub-sherbrooke04 | 0.625 | N | N | 242.5? (Missing AcqMatrix) sub-sherbrooke05 | 0.625 | N | N | 242.5? (Missing AcqMatrix) sub-sherbrooke06 | 0.625 | N | N | 242.5? (Missing AcqMatrix) sub-sherbrooke07 | 0.625 | N | N | 242.5? (Missing AcqMatrix) sub-stanford01 | 0.6 | 448 | 448 | GE sub-stanford02 | 0.6 | 448 | 448 | GE sub-stanford03 | 0.6 | 448 | 448 | GE sub-stanford04 | 0.6 | 448 | 448 | GE sub-stanford05 | 0.6 | 448 | 448 | GE sub-stanford06 | 0.6 | 448 | 448 | GE sub-strasbourg01 | 0.6 | 448 | 448 | 290 sub-strasbourg02 | 0.6 | 448 | 448 | 290 sub-strasbourg03 | 0.6 | 448 | 448 | 290 sub-strasbourg04 | 0.6 | 448 | 448 | 290 sub-strasbourg05 | 0.6 | 448 | 448 | 290 sub-strasbourg06 | 0.6 | 448 | 448 | 290 sub-tehranS01 | 0.6 | 448 | 448 | 285 sub-tehranS02 | 0.6 | 448 | 448 | 285 sub-tehranS03 | 0.6 | 448 | 448 | 285 sub-tehranS04 | 0.6 | 448 | 448 | 285 sub-tehranS05 | 0.6 | 448 | 448 | 285 sub-tehranS06 | 0.6 | 448 | 448 | 285 sub-tokyo750w01 | 0.66 | 448 | 448 | GE sub-tokyo750w02 | 0.66 | 448 | 448 | GE sub-tokyo750w03 | 0.66 | 448 | 448 | GE sub-tokyo750w04 | 0.66 | 448 | 448 | GE sub-tokyo750w05 | 0.66 | 448 | 448 | GE sub-tokyo750w06 | 0.66 | 448 | 448 | GE sub-tokyo750w07 | 0.66 | 448 | 448 | GE sub-tokyoIngenia01 | 0.625 | 320 | 320 | 242.5 sub-tokyoIngenia02 | 0.625 | 320 | 320 | 242.5 sub-tokyoIngenia03 | 0.625 | 320 | 320 | 242.5 sub-tokyoIngenia04 | 0.625 | 320 | 320 | 242.5 sub-tokyoIngenia05 | 0.625 | 320 | 320 | 242.5 sub-tokyoIngenia06 | 0.625 | 320 | 320 | 242.5 sub-tokyoIngenia07 | 0.625 | 320 | 320 | 242.5 sub-tokyoSkyra01 | 0.6 | 448 | 448 | 285 sub-tokyoSkyra02 | 0.6 | 448 | 448 | 285 sub-tokyoSkyra03 | 0.6 | 448 | 448 | 285 sub-tokyoSkyra04 | 0.6 | 448 | 448 | 285 sub-tokyoSkyra05 | 0.6 | 448 | 448 | 285 sub-tokyoSkyra06 | 0.6 | 448 | 448 | 285 sub-tokyoSkyra07 | 0.6 | 448 | 448 | 285 sub-ubc01 | 0.6 | 448 | 448 | 270.8 sub-ubc02 | 0.6 | 448 | 448 | 270.8 sub-ubc03 | 0.6 | 448 | 448 | 270.8 sub-ubc04 | 0.6 | 448 | 448 | 270.8 sub-ubc05 | 0.6 | 448 | 448 | 270.8 sub-ubc06 | 0.6 | 448 | 448 | 270.8 sub-ucdavis01 | 0.6 | 448 | 448 | 285 sub-ucdavis02 | 0.6 | 448 | 448 | 285 sub-ucdavis03 | 0.6 | 448 | 448 | 285 sub-ucdavis04 | 0.6 | 448 | 448 | 285 sub-ucdavis05 | 0.6 | 448 | 448 | 285 sub-ucdavis06 | 0.6 | 448 | 448 | 285 sub-ucdavis07 | 0.6 | 448 | 448 | 285 sub-ucl01 | 0.625 | N | N | 242.5? (Missing AcqMatrix) sub-ucl02 | 0.625 | N | N | 242.5? (Missing AcqMatrix) sub-ucl03 | 0.625 | N | N | 242.5? (Missing AcqMatrix) sub-ucl04 | 0.625 | N | N | 242.5? (Missing AcqMatrix) sub-ucl05 | 0.625 | N | N | 242.5? (Missing AcqMatrix) sub-ucl06 | 0.625 | N | N | 242.5? (Missing AcqMatrix) sub-unf01 | 0.6 | 448 | 448 | 285 sub-unf02 | 0.6 | 448 | 448 | 285 sub-unf03 | 0.6 | 448 | 448 | 285 sub-unf04 | 0.6 | 448 | 448 | 285 sub-unf05 | 0.6 | 448 | 448 | 285 sub-unf06 | 0.6 | 448 | 448 | 285 sub-unf07 | 0.6 | 448 | 448 | 285 sub-vallHebron01 | 0.6 | 448 | 448 | 290 sub-vallHebron02 | 0.6 | 448 | 448 | 290 sub-vallHebron03 | 0.6 | 448 | 448 | 290 sub-vallHebron04 | 0.6 | 448 | 448 | 290 sub-vallHebron05 | 0.6 | 448 | 448 | 290 sub-vallHebron06 | 0.6 | 448 | 448 | 290 sub-vallHebron07 | 0.6 | 448 | 448 | 290 sub-vuiisAchieva01 | 0.625 | 320 | 320 | 242.5 sub-vuiisAchieva02 | 0.625 | 320 | 320 | 242.5 sub-vuiisAchieva03 | 0.625 | 320 | 320 | 242.5 sub-vuiisAchieva04 | 0.625 | 320 | 320 | 242.5 sub-vuiisAchieva05 | 0.625 | 320 | 320 | 242.5 sub-vuiisAchieva06 | 0.625 | 320 | 320 | 242.5 sub-vuiisIngenia01 | 0.625 | 320 | 320 | 242.5 sub-vuiisIngenia02 | 0.625 | 320 | 320 | 242.5 sub-vuiisIngenia03 | 0.625 | 320 | 320 | 242.5 sub-vuiisIngenia04 | 0.625 | 320 | 320 | 242.5 sub-vuiisIngenia05 | 0.625 | 320 | 320 | 242.5 sub-vuiisIngenia06 | 0.625 | 320 | 320 | 242.5
jcohenadad commented 2 years ago

Thank you @alexfoias!

GE scans: I cannot find the duration in the protocol or in the DCM. As per their documentation, GE uses DICOM tag: 0019,105A. This tag does not exist in our DCMs.

I found this XML file from a session I did in Tokyo, if you look at the ME-GRE section, it says: 

    <ses:property name="scanTime" value="288000"/>

session.xml.zip

Now we just hope that all GE used the same parameters 😅 (which could be verified)

Philips scans: Some have TR 0.625, AcqMatrix 320 instead of TR 0.6, AcqMatrix 448 (indicated in the protocol). I have looked in the DCM from tokyo that have this matrix and I found 242.5 in the DCM tag 0018,9073. I applied this value to all scans that have similar TR and AcqMatrix.

good!

Some subjects don't have AcqMatrix in their json. What should I do in these cases ?

You can assume it is the same as the other sites (per vendor).

alexfoias commented 2 years ago

I assume that scanTime is in miliseconds.

Okay. I will open a PR with the changes in AcquisitionDuration.

jcohenadad commented 2 years ago

I assume that scanTime is in miliseconds.

fair assumption 😅

alexfoias commented 2 years ago

I pushed the changes. I will double check the values tomorrow morning and ping you when ready to review. I appended AcquisitionDuration at the end of the jsons.

alexfoias commented 2 years ago

Fixed in https://github.com/spine-generic/data-multi-subject/pull/112.