Closed sandrinebedard closed 2 years ago
The suffixes _RPI_R ... are not BIDS compatible --> Maybe we don't keep them?
This is a good point indeed. For reference, here is the BIDS definition for derivatives. Another thing I am thinking of, is that in case the preprocessing script changes (eg: we don't reorient anymore), the derivative name will still have '_RPI' in it, which might cause confusion (because nowhere in the preprocessing script there will be a mention of this reorientation).
For the long term, some derivatives could be from various pipelines --> can get confusing when someone wants to use some derivatives and find the procesing script.
Good point, although I wouldn't worry too much at this point. I see more pros than cons, mostly driven by pragmatic concerns: we are currently struggling by not having the derivatives centralized, where we don't know if maybe within the next 5 years other derivatives will possibly conflict with the existing derivatives. I would say, if that happens, we will find a solution (eg: create another folder under derivatives, labels_pipelineX/
)
This is a good point indeed. For reference, here is the BIDS definition for derivatives. Another thing I am thinking of, is that in case the preprocessing script changes (eg: we don't reorient anymore), the derivative name will still have '_RPI' in it, which might cause confusion (because nowhere in the preprocessing script there will be a mention of this reorientation).
Ok, so I will continue with the merging, but without any suffix, is that right (except -manual etc.)?
Context
A processed version of this dataset was created -->
spine-generic-processed
because of incomptibility of the derivatives and the raw data (mainly for training) Related issue. The same strategy was used for UK-Biobank --> issue.Problems with the
-processed
approachNote: This wasn't an issue for uk-biobank since there are no derivatives in the
uk-biobank
dataset, only inuk-biobank-processed
Solution: Move back all the derivatives to data-multi-subject
The proposed solution is to move back the derivatives in
data-multi-subject
. The incompatibilities will be addressed in a processing pipeline for each individual projects. The suffixes will be added back so the processing that was done is explicit.Some concerns about moving it back:
Related issues: