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spine-generic / data-multi-subject

Multi-subject data for the Spine Generic project
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Extension of brain_t1 list #150

Closed mbondy023 closed 1 year ago

mbondy023 commented 1 year ago

These are additional subjects that were determined to not be processed accurately through freesurfer due to issues with the brain T1w image. Each scan's issue is noted in the exclude.yml file.

6 subjects added to brain_t1 list. 1 scan had motion artifacts and 5 scans had severe brain cut off after defacing (all could not be re-defaced).

mguaypaq commented 1 year ago

Oh, I see what's going on: this pull request is coming from a fork of the repository, and that fork's git-annex branch is outdated. The dataset validator relies on having an updated git-annex branch to download all the data files, so it's failing.

The simplest way to fix this would be to update the fork's git-annex branch. @mbondy023, I'll open a pull request in your fork to do this. If/when you merge it, I can re-try the dataset validator in this pull request.

mbondy023 commented 1 year ago

Thank you for figuring out the issue and setting up the pull request! I've completed merging the changes.

On Mon, Sep 18, 2023 at 2:59 PM Mathieu Guay-Paquet < @.***> wrote:

Oh, I see what's going on: this pull request is coming from a fork of the repository, and that fork's git-annex branch is outdated. The dataset validator relies on having an updated git-annex branch to download all the data files, so it's failing.

The simplest way to fix this would be to update the fork's git-annex branch. @mbondy023 https://github.com/mbondy023, I'll open a pull request in your fork to do this. If/when you merge it, I can re-try the dataset validator in this pull request.

— Reply to this email directly, view it on GitHub https://github.com/spine-generic/data-multi-subject/pull/150#issuecomment-1724282833, or unsubscribe https://github.com/notifications/unsubscribe-auth/AXP3VTRWDIDJQ7KNO6CTIA3X3CRYVANCNFSM6AAAAAA42OAZTU . You are receiving this because you were mentioned.Message ID: @.***>

mguaypaq commented 1 year ago

The checks passed this time, thanks again!

mbondy023 commented 1 year ago

Awesome, thank you as well!

On Mon, Sep 18, 2023 at 4:22 PM Mathieu Guay-Paquet < @.***> wrote:

The checks passed this time, thanks again!

— Reply to this email directly, view it on GitHub https://github.com/spine-generic/data-multi-subject/pull/150#issuecomment-1724473454, or unsubscribe https://github.com/notifications/unsubscribe-auth/AXP3VTX7EF3PYOWTJJ7DTEDX3C3SZANCNFSM6AAAAAA42OAZTU . You are receiving this because you were mentioned.Message ID: @.***>