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spine-generic / data-multi-subject

Multi-subject data for the Spine Generic project
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Rename CSF segmentations in derivatives #154

Closed sandrinebedard closed 4 months ago

sandrinebedard commented 5 months ago

Description

This PR does the following steps on CSF segmentations:

I ran the following command with the script:

sct_run_batch -jobs 1 -path-data ~/datasets/data-multi-subject -path-out ~/process_results/reorient_csf_v2 -script fix-orientation-derivatives.sh -include-list [ sub-cmrrb03 sub-tokyoIngenia06 sub-nottwil03 sub-pavia04 sub-barcelona05 sub-geneva04 sub-perform02 sub-nottwil04 sub-nottwil01 sub-tokyoIngenia05 ]~~

sandrinebedard commented 5 months ago

@mguaypaq finally, we want to revert this commit, I am not sure how in git annex: https://github.com/spine-generic/data-multi-subject/pull/154/commits/f7f3db5827b7cc826588cbe8e78e768914f27303

and delete: https://github.com/spine-generic/data-multi-subject/pull/154/commits/79e7157a149fe8a73af5d9f18ec3ccfad9ccc901