Poor data quality: DWI - Githubissues

spine-generic / data-multi-subject

Multi-subject data for the Spine Generic project

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Poor data quality: DWI #31

Open jcohenadad opened 3 years ago

jcohenadad commented 3 years ago

This issue lists the sites with low DWI data quality

valosekj commented 3 years ago

I have found that following subjects have low DWI data quality (I list dwi filenames below): (release - https://github.com/spine-generic/data-multi-subject/releases/tag/r20200722)

sub-perform01_dwi_moco_dwi_mean.nii.gz

sub-beijingVerio02_dwi_concat_moco_dwi_mean.nii.gz

sub-vuiisAchieva04_dwi_moco_dwi_mean.nii.gz

sub-vuiisAchieva06_dwi_moco_dwi_mean.nii.gz

sub-sapienza01_dwi_moco_dwi_mean.nii.gz

sub-beijingPrisma03_dwi_moco_dwi_mean.nii.gz - bad FOV:

jcohenadad commented 3 years ago

@valosekj regarding: oxfordFmrib01 can you remove it pls? this issue is only about data quality. we will deal with processing problems in other issues

jcohenadad commented 3 years ago

sub-stanford01_dwi_moco_dwi_mean.nii.gz - caused by bad SC segmentation for 3 caudal slices (ROI for QC is cropped based on SC segmentation) - will be manually corrected

@valosekj that's a processing-related problem. Please only list images with low data quality. We will deal with processing problems in other issues (let's not mix problems otherwise it gets confusing).