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spine-generic / data-multi-subject

Multi-subject data for the Spine Generic project
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Source of manual segmentation/correction of CSF #71

Closed leandervaneekelen closed 3 years ago

leandervaneekelen commented 3 years ago

All subjects with _T2w_csf-manual.nii.gz seem to be missing their accompanying JSON sidecars where the author of the segmentation is documented. Do we know who did these/how they were made? Manual correction of sct_propseg output?

For reference, the subjects with csf-manual files:

Click ```./sub-cmrrb03/anat/sub-cmrrb03_T2w_csfseg-manual.nii.gz ./sub-perform02/anat/sub-perform02_T2w_csfseg-manual.nii.gz ./sub-barcelona05/anat/sub-barcelona05_T2w_csfseg-manual.nii.gz ./sub-nottwil03/anat/sub-nottwil03_T2w_csfseg-manual.nii.gz ./sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_csfseg-manual.nii.gz ./sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_csfseg-manual.nii.gz ./sub-pavia04/anat/sub-pavia04_T2w_csfseg-manual.nii.gz ./sub-geneva04/anat/sub-geneva04_T2w_csfseg-manual.nii.gz ./sub-nottwil01/anat/sub-nottwil01_T2w_csfseg-manual.nii.gz ./sub-nottwil04/anat/sub-nottwil04_T2w_csfseg-manual.nii.gz
jcohenadad commented 3 years ago

@charleygros do you remember who it was? maybe you or Anthime?

charleygros commented 3 years ago

@charleygros do you remember who it was? maybe you or Anthime?

Oh, It was actually me, manual correction of sct_propseg output!

jcohenadad commented 3 years ago

@alexfoias can you pls create and upload the JSON files for these? thanks!

alexfoias commented 3 years ago

@leandervaneekelen I'm taking care of it.