We want to use spine-generic/data-multi-subject dataset for training of sct_deepseg. However, we have encountered some issues: the SC segmentations are generated with the resampled and reoriented data.
Also, the SC segmentation is not done for all available contrasts in the dataset, we want to add those.
Context
We want to use spine-generic/data-multi-subject dataset for training of sct_deepseg. However, we have encountered some issues: the SC segmentations are generated with the resampled and reoriented data.
Also, the SC segmentation is not done for all available contrasts in the dataset, we want to add those.
Suggestion
A solution for this issue is to create a processed version of the spine-generic/data-multi-subject like we did for UK-Biobank.
spine-generic-processed
with preprocessed data