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spine-generic / data-multi-subject_DO-NOT-USE

Multi-subject data for the Spine Generic project
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Flag brnoUhb is not defined in dict flags #10

Closed PaulBautin closed 4 years ago

PaulBautin commented 4 years ago

When running sg_generate_figure ERROR: Flag brnoUhb is not defined in dict flags is printed. It seems the function add_flag does not work for this subject. Any idea?

Full output: paul@paul:~/github/spine-generic$ sg_generate_figure -path-results sct_run_batch_20200722022726/results

Processing: DWI_RD.csv Loop across subjects: 100%|████████████████| 250/250 [00:00<00:00, 972.42iter/s] Subjects removed: [] ERROR: Flag brnoUhb is not defined in dict flags

jcohenadad commented 4 years ago

could be fixed by adding an entry in the dict that defines the flags per site. see in the function

PaulBautin commented 4 years ago

Is mountSinai ==> mountSinai hospital (Canada)?

jcohenadad commented 4 years ago

Is mountSinai ==> mountSinai hospital (Canada)?

US: https://www.mountsinai.org/

valosekj commented 4 years ago

brno was renamed to brnoUhb in this PR. But we forgot to fix the flags dict.

EDIT: (And, brnoPrisma was renamed to brnoCeitec.)

jcohenadad commented 4 years ago

brno was renamed to brnoUhb in this PR. But we forgot to fix the flags dict.

@PaulBautin can you fix it? it's trivial

PaulBautin commented 4 years ago

@PaulBautin can you fix it? it's trivial

Doing it right now,