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spine-generic / data-multi-subject_DO-NOT-USE

Multi-subject data for the Spine Generic project
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Implement CI testing for BIDS #12

Closed alexfoias closed 4 years ago

alexfoias commented 4 years ago

The same implementation as data-single-subject.

Output example:

 sg_params_checker -path-in /Users/alfoi/code/data-multi-subject
/Users/alfoi/miniconda3/lib/python3.7/site-packages/bids/layout/models.py:102: FutureWarning: The 'extension' entity currently excludes the leading dot ('.'). As of version 0.14.0, it will include the leading dot. To suppress this warning and include the leading dot, use `bids.config.set_option('extension_initial_dot', True)`.
  FutureWarning)
WARNING: Incorrect RepetitionTime: sub-amu01_T2w.nii.gz; TR=2 instead of 1.5
WARNING: Incorrect FlipAngle: sub-amu01_T2w.nii.gz; FA=180 instead of 120
WARNING: Incorrect RepetitionTime: sub-amu02_T2w.nii.gz; TR=2 instead of 1.5
WARNING: Incorrect FlipAngle: sub-amu02_T2w.nii.gz; FA=180 instead of 120
WARNING: Incorrect RepetitionTime: sub-amu03_T2w.nii.gz; TR=2 instead of 1.5
WARNING: Incorrect FlipAngle: sub-amu03_T2w.nii.gz; FA=135 instead of 120
WARNING: Incorrect RepetitionTime: sub-amu04_T2w.nii.gz; TR=2 instead of 1.5
WARNING: Incorrect FlipAngle: sub-amu04_T2w.nii.gz; FA=180 instead of 120
WARNING: Incorrect RepetitionTime: sub-amu05_T2w.nii.gz; TR=2 instead of 1.5
WARNING: Incorrect FlipAngle: sub-amu05_T2w.nii.gz; FA=180 instead of 120
WARNING: Incorrect RepetitionTime: sub-beijingVerio01_T2w.nii.gz; TR=2 instead of 1.5
WARNING: Incorrect FlipAngle: sub-beijingVerio01_T2w.nii.gz; FA=180 instead of 120
WARNING: Incorrect RepetitionTime: sub-beijingVerio02_T2w.nii.gz; TR=2 instead of 1.5
WARNING: Incorrect FlipAngle: sub-beijingVerio02_T2w.nii.gz; FA=180 instead of 120
WARNING: Incorrect RepetitionTime: sub-beijingVerio03_T2w.nii.gz; TR=2 instead of 1.5
WARNING: Incorrect FlipAngle: sub-beijingVerio03_T2w.nii.gz; FA=180 instead of 120
WARNING: Incorrect RepetitionTime: sub-beijingVerio04_T2w.nii.gz; TR=2 instead of 1.5
WARNING: Incorrect FlipAngle: sub-beijingVerio04_T2w.nii.gz; FA=180 instead of 120
WARNING:sub-nottwil01_T1w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-nottwil01_T2star.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-nottwil01_T2w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-nottwil02_T1w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-nottwil02_T2star.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-nottwil02_T2w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-nottwil03_T1w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-nottwil03_T2star.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-nottwil03_T2w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-nottwil04_T1w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-nottwil04_T2star.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-nottwil04_T2w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-nottwil05_T1w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-nottwil05_T2star.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-nottwil05_T2w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-nottwil06_T1w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-nottwil06_T2star.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-nottwil06_T2w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING: Incorrect RepetitionTime: sub-strasbourg01_T2w.nii.gz; TR=2 instead of 1.5
WARNING: Incorrect FlipAngle: sub-strasbourg01_T2w.nii.gz; FA=180 instead of 120
WARNING: Incorrect RepetitionTime: sub-strasbourg02_T2w.nii.gz; TR=2 instead of 1.5
WARNING: Incorrect FlipAngle: sub-strasbourg02_T2w.nii.gz; FA=180 instead of 120
WARNING:sub-ucl01_T1w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-ucl01_T2star.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-ucl01_T2w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-ucl02_T1w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-ucl02_T2star.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-ucl02_T2w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-ucl03_T1w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-ucl03_T2star.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-ucl03_T2w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-ucl04_T1w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-ucl04_T2star.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-ucl04_T2w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-ucl05_T1w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-ucl05_T2star.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-ucl05_T2w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-ucl06_T1w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-ucl06_T2star.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING:sub-ucl06_T2w.nii.gz Missing Manufacturer in json sidecar; Cannot check parameters.
WARNING: Incorrect RepetitionTime: sub-vallHebron01_T2w.nii.gz; TR=2 instead of 1.5
WARNING: Incorrect FlipAngle: sub-vallHebron01_T2w.nii.gz; FA=170 instead of 180
WARNING: Incorrect RepetitionTime: sub-vallHebron02_T2w.nii.gz; TR=2 instead of 1.5
WARNING: Incorrect RepetitionTime: sub-vallHebron03_T2w.nii.gz; TR=2 instead of 1.5
WARNING: Incorrect RepetitionTime: sub-vallHebron04_T2w.nii.gz; TR=2 instead of 1.5
WARNING: Incorrect FlipAngle: sub-vallHebron04_T2w.nii.gz; FA=165 instead of 180
WARNING: Incorrect RepetitionTime: sub-vallHebron05_T2w.nii.gz; TR=2 instead of 1.5
WARNING: Incorrect RepetitionTime: sub-vallHebron06_T2w.nii.gz; TR=2 instead of 1.5
WARNING: Incorrect RepetitionTime: sub-vallHebron07_T2w.nii.gz; TR=2 instead of 1.5
WARNING: Incorrect FlipAngle: sub-vallHebron07_T2w.nii.gz; FA=150 instead of 180
alexfoias commented 4 years ago

Here are the results of the build.

alexfoias commented 4 years ago

@jcohenadad this PR is ready for review. I cannot add you as reviewer from the interface.