spine-generic / data-multi-subject_DO-NOT-USE

Multi-subject data for the Spine Generic project
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Add manually corrected dwi SC segmentations #15

Closed valosekj closed 4 years ago

valosekj commented 4 years ago

This PR contains manually corrected dwi SC segmentations for following subjects:

FILES_SEG:
- sub-vuiisAchieva01_dwi_moco_dwi_mean.nii.gz
- sub-vuiisAchieva04_dwi_moco_dwi_mean.nii.gz
- sub-vuiisAchieva06_dwi_moco_dwi_mean.nii.gz
- sub-perform03_dwi_moco_dwi_mean.nii.gz
- sub-stanford01_dwi_moco_dwi_mean.nii.gz
- sub-sapienza01_dwi_moco_dwi_mean.nii.gz
- sub-mniS03_dwi_moco_dwi_mean.nii.gz
- sub-perform01_dwi_moco_dwi_mean.nii.gz
- sub-beijingVerio02_dwi_concat_moco_dwi_mean.nii.gz
- sub-vuiisAchieva04_dwi_moco_dwi_mean.nii.gz

Some of corrected segmentations have poor quality of background data; see https://github.com/spine-generic/data-multi-subject/issues/14.

Below is zipped QC report.

qc_corr_20200729205726.zip

valosekj commented 4 years ago

i would just update the segmentation below so the SC shape is more realistic (the segmentation extends over an artifact)

Updated in https://github.com/spine-generic/data-multi-subject/pull/15/commits/75c2bdb1b2684aac745c75061223db95c0d255b8 :

image

updated QC for this sub: qc_corr_20200730080920.zip

jcohenadad commented 4 years ago

@valosekj for info: i've started to draft a new release: https://github.com/spine-generic/data-multi-subject/releases/tag/untagged-eaf7e036d8e8a0fb7c24

valosekj commented 4 years ago

@valosekj for info: i've started to draft a new release: https://github.com/spine-generic/data-multi-subject/releases/tag/untagged-eaf7e036d8e8a0fb7c24

The link does not work -- "page not found"

jcohenadad commented 4 years ago

The link does not work -- "page not found"

interesting, i thought drafts were publicly shareable but i guess not

valosekj commented 4 years ago

Newly created QC with sg_manual_correction -config err_file_dwi_valosek_29-07-2020.yml -qc-only:

qc_corr_20200731162412.zip

(this is a duplication of comment https://github.com/spine-generic/spine-generic/pull/160#issuecomment-667148208. I post QC also here, because it is related to this PR.)