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spine-generic / data-single-subject

Single-subject data for the Spine Generic project
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Eliminate false positives in Checking data consistency #17

Open alexfoias opened 3 years ago

alexfoias commented 3 years ago

This is due to the fact that the script is checking all git annex files *.nii.gz

alexfoias commented 3 years ago

Same for https://github.com/spine-generic/data-multi-subject/issues/67

jcohenadad commented 3 years ago

@alexfoias can you please elaborate what you mean by "false positives"? Can you maybe give an example?

alexfoias commented 3 years ago

When running CI on the current dataset, Checking data consistency section yields false positive Missing jsonSidecar for the .nii.gz files that are located in git-annex. We don't have to check the jsonSidecar files for git-annex files.

2020-12-02T21:06:57.8715285Z Missing jsonSidecar: ./.git/annex/objects/F9/vV/SHA256E-s1678451--265963dd674227380a916a9cc69d7e94e013ad3e8e3f04aaad506b2bc019a036.nii.gz/SHA256E-s1678451--265963dd674227380a916a9cc69d7e94e013ad3e8e3f04aaad506b2bc019a036.json
2020-12-02T21:06:57.8720422Z Missing jsonSidecar: ./.git/annex/objects/F9/gv/SHA256E-s6895680--810e0f2a06343670b9d9e3c978efdf3fd6733ff7690db8891dd6159b5f5f05d1.nii.gz/SHA256E-s6895680--810e0f2a06343670b9d9e3c978efdf3fd6733ff7690db8891dd6159b5f5f05d1.json
2020-12-02T21:06:57.8724859Z Missing jsonSidecar: ./.git/annex/objects/q6/7W/SHA256E-s10980709--8e7ea05115d986a54cefd18d5909c5c1203264d6089093aefdbb7a3921580cb8.nii.gz/SHA256E-s10980709--8e7ea05115d986a54cefd18d5909c5c1203264d6089093aefdbb7a3921580cb8.json
2020-12-02T21:06:57.8749372Z Missing jsonSidecar: ./.git/annex/objects/wj/gX/SHA256E-s10019085--d8a4fa9a155b1be46844c9f173fc8721f6631440c9c558d1081ff212003009ef.nii.gz/SHA256E-s10019085--d8a4fa9a155b1be46844c9f173fc8721f6631440c9c558d1081ff212003009ef.json