Processing issues in r20200826 release

[valosekj]

I found following processing issues in r20200826 release.

GM to correct:

sub-juntendoAchieva_T2star_rms.nii.gz

sub-perform_T2star_rms.nii.gz

sub-glen_T2star_rms.nii.gz

sub-tokyoSkyra_T2star_rms.nii.gz

sub-unf_T2star_rms.nii.gz

[jcohenadad]

@valosekj some feedback:

• regarding sub-juntendoAchieva for GM-CSA, it is already excluded: https://github.com/spine-generic/data-single-subject/blob/master/exclude.yml#L2; however, we need to change sub-juntendoAchieva --> juntendoAchieva (in order to display the site in the graph)
• sub-perform: looks good to me
• sub-glen: agreed, it needs correction
• sub-tokyoSkyra: agreed, we could correct
• sub-unf: looks good to me

how are mgh and juntendo750w? they look like outliers.

[valosekj]

1.

• regarding sub-juntendoAchieva for GM-CSA, it is already excluded: https://github.com/spine-generic/data-single-subject/blob/master/exclude.yml#L2; however, we need to change sub-juntendoAchieva --> juntendoAchieva (in order to display the site in the graph)

Okay, should I open PR with updated exclude.yml file?

2.

how are mgh and juntendo750w? they look like outliers.

sub-mgh_T2star_rms.nii.gz - looks good to me

sub-juntendo750w_T2star_rms.nii.gz - also not so bad for me

3.

• sub-perform: looks good to me
• sub-glen: agreed, it needs correction
• sub-tokyoSkyra: agreed, we could correct
• sub-unf: looks good to me

Thanks, it is not easy to find subjective threshold, what is sufficient and what needs corrections.

[jcohenadad]

Okay, should I open PR with updated exclude.yml file?

yes please

[jcohenadad]

Fixed