spine-generic spine-generic issues

spine-generic / spine-generic

Acquisition and Analysis Protocol for Quantitative MRI of the Spinal Cord

https://spine-generic.rtfd.io

MIT License

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issues

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Update naming convention in `process_data.sh`

#276 sandrinebedard closed 5 months ago
1
rl/revise1 height weight analysis

#275 renelabounek closed 2 months ago
16
Update `process_data.sh` to be compatible with the latest datasets releases

#274 valosekj closed 5 months ago
3
GM under-segmented on Phillips data in data-multi-subject

#273 renelabounek opened 8 months ago
7
proces_data.sh - MTS analysis

#272 renelabounek opened 9 months ago
1
`process_data.sh` - dorsal columns labels

#271 valosekj closed 5 months ago
7
Migrate ReadTheDocs configuration to `.readthedocs.yaml`

#270 mguaypaq closed 11 months ago
1
Fetch `results.zip` from r20201130 instead of the latest release

#269 mguaypaq closed 12 months ago
2
ReadTheDocs builds failing due to missing `results.zip` asset on recent `data-multi-subject` releases

#268 mguaypaq closed 11 months ago
5
Documentation - Rename MTS suffix

#267 valosekj closed 1 year ago
1
Add link to interactive book of spinal cord morphometry in PAM50 space

#266 jcohenadad opened 1 year ago
2
Clean up `sg_params_checker` so it can be run on `data-multi-subject` without crashing

#265 joshuacwnewton closed 1 year ago
3
`sg_params_checker` crashes on data-multi-subject

#264 mguaypaq closed 1 year ago
3
Fix most flake8 errors.

#263 kousu closed 1 year ago
0
Move flake8 configuration into .flake8

#262 kousu closed 1 year ago
0
Reformat code via `black`.

#261 kousu closed 1 year ago
2
Python 3.9/3.10 maintenance

#260 kousu closed 1 year ago
2
docs/body-size-pipeline.rst is not shown on the documentation website

#259 renelabounek closed 9 months ago
1
Add rl/height-weight-analysis into spine-generic:master

#258 renelabounek closed 2 years ago
9
Wrong T1 value (or legend)

#257 jcohenadad opened 2 years ago
0
Use dwi run-01 if multiple dwi runs exist

#256 renelabounek closed 2 years ago
0
add ucdavis flag into spinegeneric/cli/generate_figure.py

#255 renelabounek closed 2 years ago
3
failed process_data.sh on data-multi-subject

#254 renelabounek opened 2 years ago
5
edit tweak in docs/analysis-pipeline.rst file

#253 renelabounek closed 2 years ago
2
`sg_params_checker`: incompatibility with new pybids?

#252 kousu opened 2 years ago
3
MT file renaming - MTon an MToff not Identified

#251 Ctucket closed 2 years ago
5
Cannot build the doc: issue with yaml library

#250 jcohenadad opened 2 years ago
2
Add preprocessing and keep segmentation only

#249 sandrinebedard closed 2 years ago
8
Consider an alternative YAML scheme for `sg_manual_correction`

#248 joshuacwnewton opened 3 years ago
3
Fix sg_qc_bids_deface

#247 alexfoias closed 3 years ago
1
Error `sg_qc_bids_deface`

#246 alexfoias closed 3 years ago
0
Update requirements.txt

#245 alexfoias closed 3 years ago
0
Missing dependency in requirements

#244 alexfoias closed 3 years ago
0
Rename MT files according to the new BIDS convention

#243 jcohenadad opened 3 years ago
0
Support other python versions

#242 alexfoias opened 3 years ago
0
Update SCT version on RTD

#241 alexfoias closed 3 years ago
0
Generate the interactive Plotly figures dynamically during documentation build

#240 alexfoias closed 3 years ago
0
Generate the figures dynamically from dashboard

#239 alexfoias closed 3 years ago
1
Create section "Imaging Protocol"

#238 alexfoias closed 3 years ago
3
Add interactive graphs in RTD (currently not working-- dependent on #240)

#237 noemieroberge closed 3 years ago
6
Origin/nr/dashboard

#236 jcohenadad closed 3 years ago
1
DOC: Remove duplicate Multi-center data entry

#235 alexfoias closed 3 years ago
1
Remove duplicate Multi-center data entry

#234 jcohenadad closed 3 years ago
0
Create a section "Imaging Protocol"

#233 jcohenadad closed 3 years ago
1
Implemented test for participants.tsv in CI

#232 alexfoias closed 3 years ago
5
Implement test in our CI to make sure there is no error introduced in participants.tsv

#231 jcohenadad closed 3 years ago
1
Compute GM/WM contrast on the T2* data to interpret GM CSA values

#230 jcohenadad opened 3 years ago
0
sg_create_mosaic: Fix issues with modules compatibility; various improvements

#229 alexfoias closed 3 years ago
1
Force two decimal digits in regression box in t1-t2 agreement figure

#228 valosekj closed 3 years ago
1
Add rounding to T1w-T2w agreement figure

#227 valosekj closed 3 years ago
0