search

spinicist / QUIT

A set of tools for processing Quantitative MR Images
Mozilla Public License 2.0
59 stars 20 forks source link

CEST? #24

Closed mathieuboudreau closed 4 years ago

mathieuboudreau commented 4 years ago

Hi Toby,

You mention in your documentation that QUIT some basic CEST functionality,

https://quit.readthedocs.io/en/latest/Docs/MT.html

and I can see that in your code history you do in fact have files referencing CEST,

https://github.com/spinicist/QUIT/blob/9cd2e8e08ea9c981cb36fc78dccb565e2cdc92ee/Source/QI/Algorithms/CEST.cpp .

However I can't seem to find CEST-related functions/command line interfaces in the current master branch. Is the documentation out of date and CEST is no longer supported, or am I not looking in the right place (maybe the lineshape/z-spectrum commands are those related to CEST)?

Thanks!

spinicist commented 4 years ago

Hi, I should update that intro paragraph! You're looking for qi_zspec_interp and qi_lorentzian. I have an example nipype workflow I should upload as well.

mathieuboudreau commented 4 years ago

Great - thanks for clarifying!

spinicist commented 4 years ago

Hi, I've added the example workflow to the repo. This exact one is untested as I don't have the necessary data with me right now. Docs are also slightly tweaked, I'm waiting for readthedocs to pick up the changes. I'm going to mark this issue closed, any other questions please re-open it.