Command line parsing seems to be broken in exact branch

splatlab / squeakr

Squeakr: An Exact and Approximate k -mer Counting System

BSD 3-Clause "New" or "Revised" License

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Command line parsing seems to be broken in exact branch #29

Open rsharris opened 6 years ago

rsharris commented 6 years ago

The exact branch has a different version of clipp.h than master and development do. It seems that the test for whether the command line parse was successful always fails.

I'm able to work around this by using clipp.h from the master branch.

prashantpandey commented 5 years ago

Hi @rsharris , we have not integrated all branches into the master branch. This is should get rid of the issue.

Thanks, Prashant