I was reading the methods of splice graph construction and was wondering if PsiCLASS uses quality scores at any point? Also, are indels and substitution used? I was thinking of storing only those information that would be needed by PsiCLASS and discard the rest. This might help save a lot of space. I am currently working on designing an alignment file format that would store only the bare minimum information necessary for generating assembly.
Hello,
I was reading the methods of splice graph construction and was wondering if PsiCLASS uses quality scores at any point? Also, are indels and substitution used? I was thinking of storing only those information that would be needed by PsiCLASS and discard the rest. This might help save a lot of space. I am currently working on designing an alignment file format that would store only the bare minimum information necessary for generating assembly.
Thank you.