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splicebox / PsiCLASS

Simultaneous multi-sample transcript assembler for RNA-seq data
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Conda install does not work #27

Open Shellfishgene opened 2 years ago

Shellfishgene commented 2 years ago

Hi!

I'm not sure if you also maintain the Bioconda package of PsiCLASS. If yes, I just installed it and it seems various binaries are not installed properly:

sh: /home/shellfishgene/miniconda3/envs/psiclass/bin/samtools-0.1.19/samtools: No such file or directory

Then later:

Can't open perl script "/home/shellfishgene/miniconda3/envs/psiclass/bin/FilterSplice.pl": No such file or directory
Terminated

The files are indeed missing from that bin directory. The main psiclass command works, as well as the junc and trust-splice programs. Thanks!

mourisl commented 2 years ago

Thanks for noticing this. I will update the bioconda receipt.

margaretwoodhouse commented 1 year ago

Hi, there: I'm having the exact same issue with the conda install reported by Shellfishgene. I did the install about a week ago. Thanks!

mourisl commented 1 year ago

Thank you for the reminder. I have made a pull request to bioconda for these issues: https://github.com/bioconda/bioconda-recipes/pull/37803 . Hope it will be merged soon. Thank you!