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spond / gb_taxonomy_tools

GenBank taxonomy processing tools
MIT License
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Problems importing blastx results with ktImportBlast and with updateAccessions.sh #3

Closed SerafinGut closed 7 years ago

SerafinGut commented 7 years ago

I get empty html files when using ktImportBlast with Blastx results whereas the same tool works fine with blastn results. I thought it was an accession-list problem and I tried to update accessions with updateAccessions.sh. However, I got an error message:

Sorting dead_nucl.accession2taxid.gz... Sorting dead_prot.accession2taxid.gz... Sorting dead_wgs.accession2taxid.gz... Sorting nucl_est.accession2taxid.gz... Sorting nucl_gb.accession2taxid.gz... Sorting nucl_gss.accession2taxid.gz... Sorting nucl_wgs.accession2taxid.gz... Sorting prot.accession2taxid.gz... make: sort: write failed: /tmp/sortpErLfH: No space left on device *** [prot.accession2taxid.sorted] Error 2

Any idea of what I am doing wrong please?

SerafinGut commented 7 years ago

Sorry, this message was intended for another tool.