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spreka / biomagdsb

This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 2018 competition
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What Matab tools/libraries are needed? #5

Closed andersla closed 5 years ago

andersla commented 5 years ago

I wanted to try your pipeline and are about to install MatLab and wonder if there are any tools needed to be installed apart from MatLab itself?

Here is the list of installation options I get:

Product | Size [MB]

MATLAB 9.6 | 4095 Simulink 9.3 | 6335 5G Toolbox 1.1 | 16 Aerospace Blockset 4.1 | 164 Aerospace Toolbox 3.1 | 211 Antenna Toolbox 4.0 | 1008 Audio Toolbox 2.0 | 291 Automated Driving Toolbox 2.0 | 521 AUTOSAR Blockset 2.0 | 256 Bioinformatics Toolbox 4.12 | 541 Communications Toolbox 7.1 | 1481 Computer Vision Toolbox 9.0 | 2030 Control System Toolbox 10.6 | 796 Curve Fitting Toolbox 3.5.9 | 52 Database Toolbox 9.1 | 48 Datafeed Toolbox 5.8.1 | 14 Deep Learning Toolbox 12.1 | 804 DSP System Toolbox 9.8 | 434 Econometrics Toolbox 5.2 | 176 Embedded Coder 7.2 | 326 Filter Design HDL Coder 3.1.5 | 13 Financial Instruments Toolbox 2.9 | 111 Financial Toolbox 5.13 | 122 Fixed-Point Designer 6.3 | 340 Fuzzy Logic Toolbox 2.5 | 44 Global Optimization Toolbox 4.1 | 48 HDL Coder 3.14 | 356 Image Acquisition Toolbox 6.0 | 61 Image Processing Toolbox 10.4 | 2877 Instrument Control Toolbox 4.0 | 36 LTE HDL Toolbox 1.3 | 42 LTE Toolbox 3.1 | 99 Mapping Toolbox 4.8 | 515 MATLAB Coder 4.2 | 76 MATLAB Compiler 7.0.1 | 602 MATLAB Compiler SDK 6.6.1 | 129 MATLAB Report Generator 5.6 | 71 Mixed-Signal Blockset 1.0 | 60 Model Predictive Control Toolbox 6.3 | 38 Optimization Toolbox 8.3 | 179 Parallel Computing Toolbox 7.0 | 950 Partial Differential Equation Toolbox 3.2 | 117 Phased Array System Toolbox 4.1 | 142 Powertrain Blockset 1.5 | 178 Predictive Maintenance Toolbox 2.0 | 104 Reinforcement Learning Toolbox 1.0 | 293 RF Blockset 7.2 | 279 RF Toolbox 3.6 | 69 Risk Management Toolbox 1.5 | 22 Robotics System Toolbox 2.2 | 490 Robust Control Toolbox 6.6 | 63 Sensor Fusion and Tracking Toolbox 1.1 | 225 SerDes Toolbox 1.0 | 21 Signal Processing Toolbox 8.2 | 1867 SimBiology 5.8.2 | 94 SimEvents 5.6 | 68 Simscape 4.6 | 122 Simscape Driveline 2.16 | 37 Simscape Electrical 7.1 | 450 Simscape Fluids 2.6 | 68 Simscape Multibody 6.1 | 723 Simulink 3D Animation 8.2 | 106 Simulink Check 4.3 | 158 Simulink Coder 9.1 | 252 Simulink Control Design 5.3 | 120 Simulink Coverage 4.3 | 37 Simulink Design Optimization 3.6 | 138 Simulink Design Verifier 4.1 | 53 Simulink Desktop Real-Time 5.8 | 94 Simulink Report Generator 5.6 | 46 Simulink Requirements 1.3 | 66 Simulink Test 3.0 | 260 Stateflow 10.0 | 119 Statistics and Machine Learning Toolbox 11.5 | 704 Symbolic Math Toolbox 8.3 | 770 System Composer 1.0 | 94 System Identification Toolbox 9.10 | 67 Text Analytics Toolbox 1.3 | 212 Trading Toolbox 3.5.1 | 12 Vehicle Dynamics Blockset 1.2 | 125 Wavelet Toolbox 5.2 | 118 WLAN Toolbox 2.1 | 21

spreka commented 5 years ago

@andersla We use the following toolboxes (versions for R2017a/b): Image Processing Toolbox Parallel Computing Toolbox Statistics and Machine Learning Toolbox Curve Fitting Toolbox Global Optimization Toolbox Optimization Toolbox

Please let me know if this list proves to be insufficient. As a side note, for general usability I usually install all available toolboxes.

andersla commented 5 years ago

I can confirm that in the end the only packages needed were: Image Processing Toolbox Parallel Computing Toolbox

spreka commented 5 years ago

@andersla thank you. The others I listed are used by the training and post-processing parameter search pipelines.