2 tests fail

[yurivict]

========================================================================================= FAILURES ==========================================================================================
___________________________________________________________________________________ test_load_dicom_files ___________________________________________________________________________________
[gw1] freebsd14 -- Python 3.11.9 /usr/local/bin/python3.11

    def test_load_dicom_files():
        """Check that we can load DICOM files."""
        # This test pass locally but we need to set the variable below for it to
        # pass on CIs.
        # See https://stackoverflow.com/a/47958486/438386 for context.
        ImageFile.LOAD_TRUNCATED_IMAGES = True

        data = iofuncs.load_dicom(os.path.join(LOCATION, 'data.dcm'))
>       assert data[0]['data'].shape == (512, 512)
E       TypeError: 'NoneType' object is not subscriptable

spyder_kernels/utils/tests/test_iofuncs.py:361: TypeError
______________________________________________________________________________________ test_interrupt _______________________________________________________________________________________
[gw2] freebsd14 -- Python 3.11.9 /usr/local/bin/python3.11

    def test_interrupt():
        """
        Test that the kernel can be interrupted by calling a comm handler.
        """
        # Command to start the kernel
        cmd = "from spyder_kernels.console import start; start.main()"
        with setup_kernel(cmd) as client:
            kernel_comm = CommBase()

            # Create new comm and send the highest protocol
            comm = Comm(kernel_comm._comm_name, client)
            comm.open(data={})
            comm._send_channel = client.control_channel
            kernel_comm._register_comm(comm)

            client.execute_interactive("import time", timeout=TIMEOUT)

            # Try interrupting loop
            t0 = time.time()
            msg_id = client.execute("for i in range(100): time.sleep(.1)")
            time.sleep(.2)
            # Raise interrupt on control_channel
            kernel_comm.remote_call().raise_interrupt_signal()
            # Wait for shell message
            while True:
                assert time.time() - t0 < 5
                msg = client.get_shell_msg(timeout=TIMEOUT)
                if msg["parent_header"].get("msg_id") != msg_id:
                    # not from my request
                    continue
                break
            assert time.time() - t0 < 5

            if os.name == 'nt':
                # Windows doesn't do "interrupting sleep"
                return

            # Try interrupting sleep
            t0 = time.time()
            msg_id = client.execute("time.sleep(10)")
            time.sleep(.2)
            # Raise interrupt on control_channel
            kernel_comm.remote_call().raise_interrupt_signal()
            # Wait for shell message
            while True:
                assert time.time() - t0 < 5
                msg = client.get_shell_msg(timeout=TIMEOUT)
                if msg["parent_header"].get("msg_id") != msg_id:
                    # not from my request
                    continue
                break
>           assert time.time() - t0 < 5
E           assert (1725650273.4477134 - 1725650263.436418) < 5
E            +  where 1725650273.4477134 = <built-in function time>()
E            +    where <built-in function time> = time.time

spyder_kernels/console/tests/test_console_kernel.py:1323: AssertionError
===================================================================================== warnings summary ======================================================================================
spyder_kernels/console/tests/test_console_kernel.py:29
spyder_kernels/console/tests/test_console_kernel.py:29
spyder_kernels/console/tests/test_console_kernel.py:29
spyder_kernels/console/tests/test_console_kernel.py:29
  /usr/ports/devel/py-spyder-kernels/work-py311/spyder_kernels-3.0.0/spyder_kernels/console/tests/test_console_kernel.py:29: DeprecationWarning: Jupyter is migrating its paths to use standard platformdirs
  given by the platformdirs library.  To remove this warning and
  see the appropriate new directories, set the environment variable
  `JUPYTER_PLATFORM_DIRS=1` and then run `jupyter --paths`.
  The use of platformdirs will be the default in `jupyter_core` v6
    from jupyter_core import paths

spyder_kernels/utils/tests/test_nsview.py::test_get_type_string
  /usr/ports/devel/py-spyder-kernels/work-py311/spyder_kernels-3.0.0/spyder_kernels/utils/tests/test_nsview.py:335: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray.
    matrix = np.matrix([[1, 2], [3, 4]])

spyder_kernels/utils/tests/test_nsview.py::test_get_numpy_type
  /usr/ports/devel/py-spyder-kernels/work-py311/spyder_kernels-3.0.0/spyder_kernels/utils/tests/test_nsview.py:428: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray.
    matrix = np.matrix([[1, 2], [3, 4]])

spyder_kernels/utils/tests/test_iofuncs.py::test_spydata_import_witherror
  <frozen importlib._bootstrap>:744: DeprecationWarning: BuiltinImporter.module_repr() is deprecated and slated for removal in Python 3.12

spyder_kernels/utils/tests/test_nsview.py::test_is_editable_type
  /usr/ports/devel/py-spyder-kernels/work-py311/spyder_kernels-3.0.0/spyder_kernels/utils/tests/test_nsview.py:390: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray.
    matrix = np.matrix([[1, 2], [3, 4]])

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html

-------- coverage: platform freebsd14, python 3.11.9-final-0 ---------
Name                                                                                  Stmts   Miss  Cover
---------------------------------------------------------------------------------------------------------
/tmp/pytest-of-yuri/pytest-21/popen-gw2/test_umr_previous_modules0/foo2/__init__.py       0      0   100%
/tmp/pytest-of-yuri/pytest-21/popen-gw2/test_umr_reload_modules0/foo3/__init__.py         0      0   100%
/tmp/pytest-of-yuri/pytest-21/popen-gw2/test_umr_run0/foo1/__init__.py                    0      0   100%
/tmp/pytest-of-yuri/pytest-21/popen-gw2/test_umr_run0/foo1/bar.py                         2      1    50%
spyder_kernels/__init__.py                                                                1      0   100%
spyder_kernels/_version.py                                                                2      0   100%
spyder_kernels/comms/__init__.py                                                          1      0   100%
spyder_kernels/comms/commbase.py                                                        258    138    47%
spyder_kernels/comms/decorators.py                                                        8      0   100%
spyder_kernels/comms/frontendcomm.py                                                    112     80    29%
spyder_kernels/comms/utils.py                                                            36     25    31%
spyder_kernels/console/__init__.py                                                        0      0   100%
spyder_kernels/console/kernel.py                                                        598    371    38%
spyder_kernels/console/shell.py                                                         208     96    54%
spyder_kernels/customize/__init__.py                                                      0      0   100%
spyder_kernels/customize/code_runner.py                                                 250    184    26%
spyder_kernels/customize/namespace_manager.py                                            64     55    14%
spyder_kernels/customize/spyderpdb.py                                                   479    316    34%
spyder_kernels/customize/umr.py                                                          39      5    87%
spyder_kernels/customize/utils.py                                                        91     21    77%
spyder_kernels/utils/__init__.py                                                          0      0   100%
spyder_kernels/utils/dochelpers.py                                                      204     56    73%
spyder_kernels/utils/iofuncs.py                                                         342     78    77%
spyder_kernels/utils/lazymodules.py                                                      20      0   100%
spyder_kernels/utils/misc.py                                                             27      6    78%
spyder_kernels/utils/mpl.py                                                              12      7    42%
spyder_kernels/utils/nsview.py                                                          376    134    64%
spyder_kernels/utils/pythonenv.py                                                        45     14    69%
spyder_kernels/utils/test_utils.py                                                       25      2    92%
---------------------------------------------------------------------------------------------------------
TOTAL                                                                                  3200   1589    50%

===Flaky Test Report===

test_cwd_in_sys_path passed 1 out of the required 1 times. Success!
test_multiprocessing passed 1 out of the required 1 times. Success!
test_matplotlib_inline passed 1 out of the required 1 times. Success!
test_multiprocessing_2 passed 1 out of the required 1 times. Success!
test_np_threshold passed 1 out of the required 1 times. Success!
test_debug_namespace passed 1 out of the required 1 times. Success!
test_runfile passed 1 out of the required 1 times. Success!

===End Flaky Test Report===
================================================================================== short test summary info ==================================================================================
SKIPPED [4] spyder_kernels/console/tests/test_console_kernel.py:1141: Doesn't work with pip packages
SKIPPED [1] spyder_kernels/console/tests/test_console_kernel.py:605: Doesn't work with pip packages
SKIPPED [1] spyder_kernels/console/tests/test_console_kernel.py:1413: Only works on CIs
SKIPPED [1] spyder_kernels/console/tests/test_console_kernel.py:792: Doesn't work on non-interactive settings or Python without Tk
============================================================== 2 failed, 100 passed, 7 skipped, 8 warnings in 84.36s (0:01:24) ==============================================================
*** Error code 1

Version: 3.0.0 Python-3.11 FreeBSD 14.1

[ccordoba12]

Hey @yurivict, thanks for reporting. The first failing test (test_load_dicom_files) should be fixed in 3.0.1, which I'm going to release right in a few minutes. And the second one (test_interrupt), was already reported in issue #501. So, I'm going to close this issue in favor of that one.