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spyder-ide / spyder

Official repository for Spyder - The Scientific Python Development Environment
https://www.spyder-ide.org
MIT License
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After updating to 4.1.2 Spyder does not launch #12595

Closed emilmirzayev closed 4 years ago

emilmirzayev commented 4 years ago

Issue Report Checklist

Problem Description

After updating Spyder via conda to 4.1.2, it can not be launched and gives out error about a missing module toml. After installing toml via conda install toml Spyder launches.

Paste Traceback/Error Below (if applicable)


(base) C:\Users\Emil>spyder
Traceback (most recent call last):
  File "C:\Users\Emil\anaconda3\Scripts\spyder-script.py", line 10, in <module>
    sys.exit(main())
  File "C:\Users\Emil\anaconda3\lib\site-packages\spyder\app\start.py", line 205, in main
    mainwindow.main()
  File "C:\Users\Emil\anaconda3\lib\site-packages\spyder\app\mainwindow.py", line 3734, in main
    mainwindow = run_spyder(app, options, args)
  File "C:\Users\Emil\anaconda3\lib\site-packages\spyder\app\mainwindow.py", line 3590, in run_spyder
    main.setup()
  File "C:\Users\Emil\anaconda3\lib\site-packages\spyder\app\mainwindow.py", line 977, in setup
    'spyder.plugins.{}'.format(plugin_name))
  File "C:\Users\Emil\anaconda3\lib\importlib\__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 1006, in _gcd_import
  File "<frozen importlib._bootstrap>", line 983, in _find_and_load
  File "<frozen importlib._bootstrap>", line 967, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 677, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 728, in exec_module
  File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
  File "C:\Users\Emil\anaconda3\lib\site-packages\spyder\plugins\pylint\__init__.py", line 14, in <module>
    from .plugin import Pylint as PLUGIN_CLASS
  File "C:\Users\Emil\anaconda3\lib\site-packages\spyder\plugins\pylint\plugin.py", line 29, in <module>
    from spyder.plugins.pylint.confpage import PylintConfigPage
  File "C:\Users\Emil\anaconda3\lib\site-packages\spyder\plugins\pylint\confpage.py", line 16, in <module>
    from spyder.plugins.pylint.widgets.pylintgui import PylintWidget
  File "C:\Users\Emil\anaconda3\lib\site-packages\spyder\plugins\pylint\widgets\pylintgui.py", line 37, in <module>
    from spyder.plugins.pylint.utils import get_pylintrc_path
  File "C:\Users\Emil\anaconda3\lib\site-packages\spyder\plugins\pylint\utils.py", line 16, in <module>
    import pylint.config
  File "C:\Users\Emil\anaconda3\lib\site-packages\pylint\config.py", line 54, in <module>
    import toml
ModuleNotFoundError: No module named 'toml'
[46324:17776:0504/115317.032:ERROR:broker_win.cc(59)] Error reading broker pipe: The pipe has been ended. (0x6D)
[2972:19016:0504/115317.032:ERROR:broker_win.cc(59)] Error reading broker pipe: The pipe has been ended. (0x6D)

Versions

Dependencies

# packages in environment at C:\Users\Emil\anaconda3:
#
# Name                    Version                   Build  Channel
_ipyw_jlab_nb_ext_conf    0.1.0                    py37_0
absl-py                   0.9.0                    pypi_0    pypi
alabaster                 0.7.12                   py37_0
altgraph                  0.17                     pypi_0    pypi
anaconda-client           1.7.2                    py37_0
anaconda-navigator        1.9.12                   py37_0
argh                      0.26.2                   py37_0
arviz                     0.6.1                      py_0
asn1crypto                1.3.0                    py37_0
astor                     0.8.1                    pypi_0    pypi
astroid                   2.3.3                    py37_0
atomicwrites              1.3.0                    py37_1
attrs                     19.3.0                     py_0
autopep8                  1.4.4                      py_0
babel                     2.8.0                      py_0
backcall                  0.1.0                    py37_0
backports                 1.0                        py_2
backports.functools_lru_cache 1.6.1                      py_0
backports.tempfile        1.0                        py_1
backports.weakref         1.0.post1                  py_1
bcrypt                    3.1.7            py37he774522_0
beautifulsoup4            4.9.0                    py37_0
blas                      1.0                         mkl
bleach                    3.1.4                      py_0
bs4                       4.9.0                         0
bzip2                     1.0.8                he774522_0
ca-certificates           2020.1.1                      0
cachetools                4.1.0                    pypi_0    pypi
certifi                   2020.4.5.1               py37_0
cffi                      1.14.0           py37h7a1dbc1_0
cftime                    1.1.1.1          py37h2a96729_0
chardet                   3.0.4                 py37_1003
click                     7.1.1                      py_0
cloudpickle               1.4.0                      py_0
clyent                    1.2.2                    py37_1
colorama                  0.4.3                      py_0
conda                     4.8.3                    py37_0
conda-build               3.18.11                  py37_0
conda-env                 2.6.0                         1
conda-package-handling    1.6.0            py37h62dcd97_0
conda-verify              3.4.2                      py_1
console_shortcut          0.1.1                         4
cpuonly                   1.0                           0    pytorch
cryptography              2.8              py37h7a1dbc1_0
curl                      7.69.1               h2a8f88b_0
cycler                    0.10.0                   py37_0
decorator                 4.4.2                      py_0
defusedxml                0.6.0                      py_0
diff-match-patch          20181111                   py_0
docutils                  0.16                     py37_0
entrypoints               0.3                      py37_0
filelock                  3.0.12                     py_0
flake8                    3.7.9                    py37_0
freetype                  2.9.1                ha9979f8_1
future                    0.18.2                   py37_0
gast                      0.2.2                    pypi_0    pypi
glob2                     0.7                        py_0
google-auth               1.14.1                   pypi_0    pypi
google-auth-oauthlib      0.4.1                    pypi_0    pypi
google-pasta              0.2.0                    pypi_0    pypi
grpcio                    1.28.1                   pypi_0    pypi
h5py                      2.10.0           py37h5e291fa_0
hdf4                      4.2.13               h712560f_2
hdf5                      1.10.4               h7ebc959_0
icc_rt                    2019.0.0             h0cc432a_1
icu                       58.2                 ha925a31_3
idna                      2.9                        py_1
imagesize                 1.2.0                      py_0
imbalanced-learn          0.6.2                      py_0    conda-forge
importlib_metadata        1.5.0                    py37_0
intel-openmp              2019.0                   pypi_0    pypi
intervaltree              3.0.2                      py_0
ipykernel                 5.1.4            py37h39e3cac_0
ipython                   7.13.0           py37h5ca1d4c_0
ipython_genutils          0.2.0                    py37_0
ipywidgets                7.5.1                      py_0
isort                     4.3.21                   py37_0
jedi                      0.15.2                   py37_0
jinja2                    2.11.2                     py_0
joblib                    0.14.1                     py_0
jpeg                      9b                   hb83a4c4_2
json5                     0.9.4                      py_0
jsonschema                3.2.0                    py37_0
jupyter_client            6.1.3                      py_0
jupyter_core              4.6.3                    py37_0
jupyterlab                1.2.6              pyhf63ae98_0
jupyterlab_server         1.1.1                      py_0
keras                     2.3.1                    pypi_0    pypi
keras-applications        1.0.8                    pypi_0    pypi
keras-preprocessing       1.1.0                    pypi_0    pypi
keyring                   21.1.1                   py37_2
kiwisolver                1.2.0            py37h74a9793_0
krb5                      1.17.1               hc04afaa_0
lazy-object-proxy         1.4.3            py37he774522_0
libarchive                3.3.3                h0643e63_5
libcurl                   7.69.1               h2a8f88b_0
libgpuarray               0.7.6                hfa6e2cd_0
libiconv                  1.15                 h1df5818_7
liblief                   0.9.0                ha925a31_3
libnetcdf                 4.7.3                h1302dcc_0
libpng                    1.6.37               h2a8f88b_0
libpython                 2.1                      py37_0
libsodium                 1.0.16               h9d3ae62_0
libspatialindex           1.9.3                h33f27b4_0
libssh2                   1.9.0                h7a1dbc1_1
libtiff                   4.1.0                h56a325e_0
libxml2                   2.9.9                h464c3ec_0
lz4-c                     1.8.1.2              h2fa13f4_0
lzo                       2.10                 he774522_2
m2w64-binutils            2.25.1                        5
m2w64-bzip2               1.0.6                         6
m2w64-crt-git             5.0.0.4636.2595836               2
m2w64-gcc                 5.3.0                         6
m2w64-gcc-ada             5.3.0                         6
m2w64-gcc-fortran         5.3.0                         6
m2w64-gcc-libgfortran     5.3.0                         6
m2w64-gcc-libs            5.3.0                         7
m2w64-gcc-libs-core       5.3.0                         7
m2w64-gcc-objc            5.3.0                         6
m2w64-gmp                 6.1.0                         2
m2w64-headers-git         5.0.0.4636.c0ad18a               2
m2w64-isl                 0.16.1                        2
m2w64-libiconv            1.14                          6
m2w64-libmangle-git       5.0.0.4509.2e5a9a2               2
m2w64-libwinpthread-git   5.0.0.4634.697f757               2
m2w64-make                4.1.2351.a80a8b8               2
m2w64-mpc                 1.0.3                         3
m2w64-mpfr                3.1.4                         4
m2w64-pkg-config          0.29.1                        2
m2w64-toolchain           5.3.0                         7
m2w64-tools-git           5.0.0.4592.90b8472               2
m2w64-windows-default-manifest 6.4                           3
m2w64-winpthreads-git     5.0.0.4634.697f757               2
m2w64-zlib                1.2.8                        10
mako                      1.1.2                      py_0
markdown                  3.2.1                    pypi_0    pypi
markupsafe                1.1.1            py37he774522_0
matplotlib-base           3.1.3            py37h64f37c6_0
mccabe                    0.6.1                    py37_1
menuinst                  1.4.16           py37he774522_0
mistune                   0.8.4            py37he774522_0
mkl                       2020.0                      166
mkl-service               2.3.0            py37hb782905_0
mkl_fft                   1.0.15           py37h14836fe_0
mkl_random                1.1.0            py37h675688f_0
msys2-conda-epoch         20160418                      1
navigator-updater         0.2.1                    py37_0
nbconvert                 5.6.1                    py37_0
nbformat                  5.0.4                      py_0
netcdf4                   1.5.3            py37h012c1a0_0
ninja                     1.9.0            py37h74a9793_0
notebook                  6.0.3                    py37_0
numpy                     1.18.1           py37h93ca92e_0
numpy-base                1.18.1           py37hc3f5095_1
numpydoc                  0.9.2                      py_0
oauthlib                  3.1.0                    pypi_0    pypi
olefile                   0.46                     py37_0
openssl                   1.1.1g               he774522_0
opt-einsum                3.2.1                    pypi_0    pypi
packaging                 20.3                       py_0
pandas                    1.0.3            py37h47e9c7a_0
pandoc                    2.2.3.2                       0
pandocfilters             1.4.2                    py37_1
paramiko                  2.7.1                      py_0
parso                     0.5.2                      py_0
pathtools                 0.1.2                      py_1
patsy                     0.5.1                    py37_0
pefile                    2019.4.18                pypi_0    pypi
pexpect                   4.8.0                    py37_0
pickleshare               0.7.5                    py37_0
pillow                    7.1.2            py37hcc1f983_0
pip                       20.0.2                   py37_1
pkginfo                   1.5.0.1                  py37_0
pluggy                    0.13.1                   py37_0
powershell_shortcut       0.0.1                         3
prometheus_client         0.7.1                      py_0
prompt-toolkit            3.0.4                      py_0
prompt_toolkit            3.0.4                         0
protobuf                  3.11.3                   pypi_0    pypi
psutil                    5.7.0            py37he774522_0
py-lief                   0.9.0            py37ha925a31_3
pyasn1                    0.4.8                    pypi_0    pypi
pyasn1-modules            0.2.8                    pypi_0    pypi
pycodestyle               2.5.0                    py37_0
pycosat                   0.6.3            py37he774522_0
pycparser                 2.20                       py_0
pydocstyle                4.0.1                      py_0
pyflakes                  2.1.1                    py37_0
pygments                  2.6.1                      py_0
pygpu                     0.7.6            py37h452e1ab_0
pyinstaller               3.6                      pypi_0    pypi
pylint                    2.5.0                    py37_0
pymc3                     3.8                        py_0
pynacl                    1.3.0            py37h62dcd97_0
pyopenssl                 19.1.0                   py37_0
pyparsing                 2.4.7                      py_0
pyperclip                 1.8.0                    pypi_0    pypi
pypiwin32                 223                      pypi_0    pypi
pyqt                      5.9.2            py37h6538335_2
pyreadline                2.1                      py37_1
pyro-api                  0.1.1                    pypi_0    pypi
pyro-ppl                  1.3.1                    pypi_0    pypi
pyrsistent                0.16.0           py37he774522_0
pysocks                   1.7.1                    py37_0
python                    3.7.6                h60c2a47_2
python-dateutil           2.8.1                      py_0
python-jsonrpc-server     0.3.4                      py_0
python-language-server    0.31.10                  py37_0
python-libarchive-c       2.9                        py_0
pytorch                   1.5.0               py3.7_cpu_0  [cpuonly]  pytorch
pytz                      2019.3                     py_0
pywin32                   227              py37he774522_1
pywin32-ctypes            0.2.0                 py37_1000
pywinpty                  0.5.7                    py37_0
pyyaml                    5.3.1            py37he774522_0
pyzmq                     18.1.1           py37ha925a31_0
qdarkstyle                2.8.1                      py_0
qt                        5.9.7            vc14h73c81de_0
qtawesome                 0.7.0                      py_0
qtconsole                 4.7.3                      py_0
qtpy                      1.9.0                      py_0
requests                  2.23.0                   py37_0
requests-oauthlib         1.3.0                    pypi_0    pypi
rope                      0.16.0                     py_0
rsa                       4.0                      pypi_0    pypi
rtree                     0.9.4            py37h21ff451_1
ruamel_yaml               0.15.87          py37he774522_0
scikit-learn              0.22.1           py37h6288b17_0
scipy                     1.4.1            py37h9439919_0
send2trash                1.5.0                    py37_0
setuptools                46.1.3                   py37_0
sip                       4.19.8           py37h6538335_0
six                       1.14.0                   py37_0
snowballstemmer           2.0.0                      py_0
sortedcontainers          2.1.0                    py37_0
soupsieve                 2.0                        py_0
sphinx                    3.0.3                      py_0
sphinxcontrib-applehelp   1.0.2                      py_0
sphinxcontrib-devhelp     1.0.2                      py_0
sphinxcontrib-htmlhelp    1.0.3                      py_0
sphinxcontrib-jsmath      1.0.1                      py_0
sphinxcontrib-qthelp      1.0.3                      py_0
sphinxcontrib-serializinghtml 1.1.4                      py_0
spyder                    4.1.2                    py37_0
spyder-kernels            1.9.0                    py37_0
sqlite                    3.31.1               h2a8f88b_1
statistics                1.0.3.5                  pypi_0    pypi
tensorboard               1.15.0                   pypi_0    pypi
tensorflow                1.15.2                   pypi_0    pypi
tensorflow-estimator      1.15.1                   pypi_0    pypi
termcolor                 1.1.0                    pypi_0    pypi
terminado                 0.8.3                    py37_0
testpath                  0.4.4                      py_0
theano                    1.0.4                    py37_0
tk                        8.6.8                hfa6e2cd_0
toml                      0.10.0           py37h28b3542_0
torchvision               0.6.0                  py37_cpu  [cpuonly]  pytorch
tornado                   6.0.4            py37he774522_1
tqdm                      4.45.0                     py_0
traitlets                 4.3.3                    py37_0
ujson                     1.35             py37hfa6e2cd_0
urllib3                   1.25.8                   py37_0
vc                        14.1                 h0510ff6_4
vs2015_runtime            14.16.27012          hf0eaf9b_1
watchdog                  0.10.2                   py37_0
wcwidth                   0.1.9                      py_0
webencodings              0.5.1                    py37_1
wheel                     0.34.2                   py37_0
widgetsnbextension        3.5.1                    py37_0
win10toast                0.9                      pypi_0    pypi
win_inet_pton             1.1.0                    py37_0
wincertstore              0.2                      py37_0
winpty                    0.4.3                         4
wrapt                     1.12.1           py37he774522_1
xarray                    0.15.1                     py_0
xgboost                   1.0.2                    pypi_0    pypi
xmltodict                 0.12.0                     py_0
xz                        5.2.5                h62dcd97_0
yaml                      0.1.7                hc54c509_2
yapf                      0.28.0                     py_0
zeromq                    4.3.1                h33f27b4_3
zipp                      3.1.0                      py_0
zlib                      1.2.11               h62dcd97_4
zstd                      1.3.7                h508b16e_0
goanpeca commented 4 years ago

Hi @emilmirzayev , thanks for reporting.

This is an issue with latest pylint (conda) package that Anaconda release. We have already requested the fix. In the meantime please install toml manually

Open a terminal and enter

conda install toml

Cheers!

eafpres commented 4 years ago

I have this same issue with 4.1.4. One env is OK, another fails as above. The working env has 4.1.2 The failing env has 4.1.4 The failing env also has pydotplus and six.

(keras-gpu-4) C:\Users\bbate>spyder
Traceback (most recent call last):
File "C:\Users\bbate\Miniconda3\envs\keras-gpu-4\Scripts\spyder-script.py", line 10, in sys.exit(main())
File "C:\Users\bbate\Miniconda3\envs\keras-gpu-4\lib\site-packages\spyder\app\start.py", line 205, in main mainwindow.main()
File "C:\Users\bbate\Miniconda3\envs\keras-gpu-4\lib\site-packages\spyder\app\mainwindow.py", line 3763, in main mainwindow = run_spyder(app, options, args)
File "C:\Users\bbate\Miniconda3\envs\keras-gpu-4\lib\site-packages\spyder\app\mainwindow.py", line 3638, in run_spyder main.setup()
File "C:\Users\bbate\Miniconda3\envs\keras-gpu-4\lib\site-packages\spyder\app\mainwindow.py", line 984, in setup plugin = module.PLUGIN_CLASS(self)
File "C:\Users\bbate\Miniconda3\envs\keras-gpu-4\lib\site-packages\spyder\plugins\pylint\plugin.py", line 60, in init top_max_entries=MAX_HISTORY_ENTRIES)
File "C:\Users\bbate\Miniconda3\envs\keras-gpu-4\lib\site-packages\spyder\plugins\pylint\widgets\pylintgui.py", line 252, in init
self.set_filename(f)
File "C:\Users\bbate\Miniconda3\envs\keras-gpu-4\lib\site-packages\spyder\plugins\pylint\widgets\pylintgui.py", line 279, in set_filename
self.curr_filenames.pop(index)
IndexError: pop index out of range
[22624:9332:0811/165253.834:ERROR:broker_win.cc(59)] Error reading broker pipe: The pipe has been ended. (0x6D)
[13940:21200:0811/165253.834:ERROR:broker_win.cc(59)] Error reading broker pipe: The pipe has been ended. (0x6D)

I installed toml as noted above, but it did not fix it, same messages

Failing env: `(keras-gpu-4) C:\Users\bbate>conda list

packages in environment at C:\Users\bbate\Miniconda3\envs\keras-gpu-4:

#

Name Version Build Channel

_anaconda_depends 2019.03 py37_0 _py-xgboost-mutex 2.0 cpu_0 absl-py 0.9.0 pypi_0 pypi adjusttext 0.7.3 pypi_0 pypi alabaster 0.7.12 py37_0 alembic 1.4.0 py_0 conda-forge anaconda custom py37_1 anaconda-client 1.7.2 py37_0 anaconda-project 0.8.4 py_0 argh 0.26.2 py37_0 arrow 0.15.6 py37hc8dfbb8_1 conda-forge asn1crypto 0.24.0 py37_3 intel astor 0.8.1 pypi_0 pypi astroid 2.3.3 py37_0 astropy 4.0 py37he774522_0 atomicwrites 1.3.0 py37_1 attrs 19.3.0 py_0 autopep8 1.4.4 py_0 babel 2.8.0 py_0 backcall 0.1.0 py37_0 backports 1.0 py_2 backports.os 0.1.1 py37_0 backports.shutil_get_terminal_size 1.0.0 py37_2 bcrypt 3.1.7 py37he774522_0 beautifulsoup4 4.8.2 py37_0 binaryornot 0.4.4 py_1 conda-forge bitarray 1.2.1 py37he774522_0 bkcharts 0.2 py37_0 blas 1.0 mkl bleach 3.1.0 py37_0 blosc 1.16.3 h7bd577a_0 bokeh 2.1.0 py37hc8dfbb8_0 conda-forge boost-cpp 1.72.0 h0caebb8_0 conda-forge/label/cf202003 boto 2.49.0 py37_0 boto3 1.9.66 py37_0 anaconda botocore 1.12.189 py_0 bottleneck 1.3.2 py37h2a96729_0 brotlipy 0.7.0 py37h4ab8f01_1000 conda-forge bs4 0.0.1 pypi_0 pypi bzip2 1.0.8 he774522_0 ca-certificates 2020.6.24 0 anaconda cachetools 4.0.0 pypi_0 pypi cairo 1.16.0 h63a05c6_1001 conda-forge certifi 2020.4.5.2 py37_0 intel cffi 1.12.3 py37_2 intel cfitsio 3.470 hfa6e2cd_2 conda-forge/label/cf202003 chardet 3.0.4 py37_3 intel click 7.0 py37_0 click-plugins 1.1.1 py_0 conda-forge/label/cf202003 cliff 2.15.0 py37_0 conda-forge cligj 0.5.0 py_0 conda-forge/label/cf202003 cloudpickle 1.3.0 py_0 clyent 1.2.2 py37_1 cmd2 0.9.15 py37_0 conda-forge colorama 0.4.3 py_0 colorcet 2.0.1 py_0 conda-forge coloredlogs 10.0 py37_0 colorlog 4.1.0 py37_1 conda-forge comtypes 1.1.7 py37_0 confuse 1.3.0 pyh9f0ad1d_0 conda-forge console_shortcut 0.1.1 4 contextlib2 0.6.0.post1 py_0 cookiecutter 1.6.0 py37_1000 conda-forge cryptography 2.7 py37_0 intel curl 7.68.0 h4496350_0 conda-forge/label/cf202003 cycler 0.10.0 py37_7 intel cython 0.29.13 py37ha68da19_0 intel cytoolz 0.10.1 py37he774522_0 daal 2020.0 intel_166 intel daal4py 2020.0 py37ha68da19_8 intel dask 2.11.0 py_0 dask-core 2.11.0 py_0 datashader 0.11.0 pyh9f0ad1d_0 conda-forge datashape 0.5.4 py_1 conda-forge decorator 4.4.1 py_0 defusedxml 0.6.0 py_0 descartes 1.1.0 py_4 conda-forge diff-match-patch 20181111 py_0 distributed 2.11.0 py37_0 docutils 0.16 py37_0 entrypoints 0.3 py37_0 et_xmlfile 1.0.1 py37_0 expat 2.2.9 he025d50_2 conda-forge/label/cf202003 fastcache 1.1.0 py37he774522_0 ffmpeg 4.2.3 ha925a31_0 conda-forge filelock 3.0.12 py_0 fiona 1.8.9.post2 py37h3234bc7_0 conda-forge/label/cf202003 flake8 3.8.3 py_0 anaconda flask 1.1.1 py_0 flask-compress 1.4.0 pypi_0 pypi freetype 2.10.1 1 intel freexl 1.0.5 hd288d7e_1002 conda-forge/label/cf202003 fsspec 0.6.2 py_0 future 0.18.2 py37_0 gast 0.2.2 pypi_0 pypi gdal 2.4.2 py37he6b6c38_8 conda-forge/label/cf202003 geopandas 0.7.0 py_1 conda-forge/label/cf202003 geos 3.7.2 he025d50_2 conda-forge/label/cf202003 geotiff 1.5.1 h4b1d854_3 conda-forge/label/cf202003 get_terminal_size 1.0.0 h38e98db_0 gettext 0.19.8.1 hb01d8f6_1002 conda-forge gevent 1.4.0 py37he774522_0 glib 2.64.3 he4de6d7_0 conda-forge glob2 0.7 py_0 gobject-introspection 1.64.1 py37hf0dd101_1 conda-forge google-auth 1.11.2 pypi_0 pypi google-auth-oauthlib 0.4.1 pypi_0 pypi google-pasta 0.1.8 pypi_0 pypi graphviz 2.38 hfd603c8_2 anaconda greenlet 0.4.15 py37hfa6e2cd_0 grpcio 1.27.2 pypi_0 pypi h5py 2.9.0 nompi_py37h9dfa0df_1103 conda-forge/label/cf202003 hdf4 4.2.13 hf8e6fe8_1003 conda-forge/label/cf202003 hdf5 1.10.4 nompi_hcc15c50_1106 conda-forge/label/cf202003 heapdict 1.0.1 py_0 hiplot 0.1.4 pypi_0 pypi holoviews 1.13.2 pyh9f0ad1d_0 conda-forge html5lib 1.0.1 py37_0 htmlmin 0.1.12 py_1 conda-forge humanfriendly 8.2 py37_0 hypothesis 5.5.4 py_0 icc_rt 2020.0 intel_166 intel icu 58.2 ha66f8fd_1 idna 2.6 py37_3 intel imagehash 4.1.0 pyh9f0ad1d_0 conda-forge imageio 2.6.1 py37_0 imageio-ffmpeg 0.4.2 py_0 conda-forge imagesize 1.2.0 py_0 imbalanced-learn 0.7.0 py_1 conda-forge impi_rt 2019.6 intel_166 intel importlib-metadata 1.6.1 py37hc8dfbb8_0 conda-forge importlib_metadata 1.5.0 py37_0 inflect 4.1.0 py37_0 intel-openmp 2020.0 intel_166 intel intelpython 2020.0 1 intel intervaltree 3.0.2 py_0 ipykernel 5.1.4 py37h39e3cac_0 ipympl 0.5.6 pyh9f0ad1d_1 conda-forge ipython 7.12.0 py37h5ca1d4c_0 ipython_genutils 0.2.0 py37_0 ipywidgets 7.5.1 py_0 isort 4.3.21 py37_0 itsdangerous 1.1.0 py37_0 jaraco.itertools 5.0.0 py_0 jdcal 1.4.1 py_0 jedi 0.17.1 py37_0 anaconda jinja2 2.11.1 py_0 jinja2-time 0.2.0 py_2 conda-forge jmespath 0.9.4 py_0 anaconda joblib 0.16.0 py_0 conda-forge jpeg 9c hfa6e2cd_1001 conda-forge/label/cf202003 json5 0.9.1 py_0 jsonschema 3.2.0 py37_0 jupyter 1.0.0 py37_7 jupyter_client 5.3.4 py37_0 jupyter_console 6.1.0 py_0 jupyter_contrib_core 0.3.3 py_2 conda-forge jupyter_contrib_nbextensions 0.5.1 py37_0 conda-forge jupyter_core 4.6.1 py37_0 jupyter_highlight_selected_word 0.2.0 py37_1000 conda-forge jupyter_latex_envs 1.4.4 py37_1000 conda-forge jupyter_nbextensions_configurator 0.4.1 py37_0 conda-forge jupyterlab 1.2.6 pyhf63ae98_0 jupyterlab_server 1.0.6 py_0 kealib 1.4.10 heacb130_1003 conda-forge/label/cf202003 keras-applications 1.0.8 pypi_0 pypi keras-preprocessing 1.1.0 pypi_0 pypi keyring 21.1.0 py37_0 kiwisolver 1.0.1 py37_2 intel krb5 1.16.4 hc04afaa_0 lazy-object-proxy 1.4.3 py37he774522_0 libarchive 3.3.3 h0643e63_5 libcurl 7.68.0 h4496350_0 conda-forge/label/cf202003 libffi 3.2.1 h6538335_1007 conda-forge libgdal 2.4.2 h4f71e3f_8 conda-forge/label/cf202003 libiconv 1.15 hfa6e2cd_0 intel libkml 1.3.0 h7e985d0_1011 conda-forge/label/cf202003 liblief 0.9.0 ha925a31_3 libnetcdf 4.6.2 h396784b_1001 conda-forge/label/cf202003 libpng 1.6.37 hfe6a214_1 conda-forge libpq 11.5 hb0bdaea_1 conda-forge/label/cf202003 libsodium 1.0.16 h9d3ae62_0 libspatialindex 1.9.3 h33f27b4_0 libspatialite 4.3.0a h01b1fc4_1030 conda-forge/label/cf202003 libssh2 1.8.2 h642c060_2 conda-forge/label/cf202003 libtiff 4.1.0 h56a325e_0 libxgboost 0.90 1 anaconda libxml2 2.9.9 hfa6e2cd_0 intel libxslt 1.1.33 h579f668_0 llvmlite 0.31.0 py37ha1f5b8b_1 intel locket 0.2.0 py37_1 lxml 4.5.0 py37h1350720_0 lz4-c 1.8.1.2 h2fa13f4_0 intel lzo 2.10 hfa6e2cd_0 intel m2cgen 0.8.0 pypi_0 pypi m2w64-expat 2.1.1 2 m2w64-gcc-libgfortran 5.3.0 6 m2w64-gcc-libs 5.3.0 7 m2w64-gcc-libs-core 5.3.0 7 m2w64-gettext 0.19.7 2 m2w64-gmp 6.1.0 2 m2w64-libiconv 1.14 6 m2w64-libwinpthread-git 5.0.0.4634.697f757 2 m2w64-xz 5.2.2 2 mako 1.1.2 py_0 markdown 3.2.1 pypi_0 pypi markupsafe 1.1.1 py37he774522_0 matplotlib 2.2.3 py37hd159220_0 matplotlib-base 3.2.1 py37h911224e_0 conda-forge mccabe 0.6.1 py37_1 menuinst 1.4.16 py37_0 intel missingno 0.4.2 py_0 conda-forge mistune 0.8.4 py37he774522_0 mkl 2020.0 intel_166 intel mkl-service 2.3.0 py37_0 intel mkl_fft 1.0.15 py37ha68da19_3 intel mkl_random 1.1.0 py37ha68da19_0 intel mock 4.0.1 py_0 modin 0.7.3 py_0 conda-forge more-itertools 8.2.0 py_0 moviepy 1.0.1 py_0 conda-forge mpmath 1.1.0 py37_0 msgpack-python 0.6.1 py37h74a9793_1 msys2-conda-epoch 20160418 1 multipledispatch 0.6.0 py37_0 munch 2.5.0 py_0 conda-forge/label/cf202003 nbconvert 5.6.1 py37_0 nbformat 5.0.4 py_0 networkx 2.4 py_0 nltk 3.4.5 py37_0 nose 1.3.7 py37_2 notebook 6.0.3 py37_0 numba 0.48.0 np117py37_0 intel numexpr 2.7.0 py37_1 intel numpy 1.17.4 py37ha68da19_4 intel numpy-base 1.17.4 py37_4 intel numpydoc 0.9.2 py_0 oauthlib 3.1.0 pypi_0 pypi olefile 0.46 py37_0 openjpeg 2.3.1 h57dd2e7_3 conda-forge/label/cf202003 openpyxl 3.0.3 py_0 openssl 1.1.1g vc14he774522_1 [vc14] intel opt-einsum 3.1.0 pypi_0 pypi optuna 1.0.0 py_0 conda-forge packaging 20.1 py_0 pandas 1.0.3 py37h3bbf574_1 conda-forge pandas-profiling 2.8.0 py_0 conda-forge pandas-summary 0.0.41 py_1 conda-forge pandoc 2.2.3.2 0 pandocfilters 1.4.2 py37_1 panel 0.9.5 py_1 conda-forge param 1.9.3 py_0 conda-forge paramiko 2.7.1 py_0 parso 0.7.0 py_0 anaconda partd 1.1.0 py_0 path 13.1.0 py37_0 path.py 12.4.0 0 pathlib2 2.3.5 py37_0 pathtools 0.1.2 py_1 patsy 0.5.1 py37_0 pbr 5.4.2 py_0 conda-forge pcre 8.44 h6538335_0 conda-forge pep8 1.7.1 py37_0 pexpect 4.8.0 py37_0 phik 0.10.0 py_0 conda-forge pickleshare 0.7.5 py37_0 pillow 7.0.0 py37hcc1f983_0 pip 20.1.1 pypi_0 pypi pixman 0.38.0 hfa6e2cd_1003 conda-forge pkginfo 1.5.0.1 py37_0 plotly 4.8.1 py_0 plotly_express 0.4.1 py_0 plotly pluggy 0.13.1 py37_0 ply 3.11 py37_0 poppler 0.67.0 h1707e21_8 conda-forge/label/cf202003 poppler-data 0.4.9 1 conda-forge/label/cf202003 postgresql 11.5 h06f7779_1 conda-forge/label/cf202003 powershell_shortcut 0.0.1 3 poyo 0.5.0 py_0 conda-forge prettytable 0.7.2 py_3 conda-forge proglog 0.1.9 py_0 conda-forge proj4 6.1.1 hc2d0af5_1 conda-forge/label/cf202003 prometheus_client 0.7.1 py_0 prompt_toolkit 3.0.3 py_0 protobuf 3.11.3 pypi_0 pypi psutil 5.6.7 py37he774522_0 py 1.8.1 py_0 py-lief 0.9.0 py37ha925a31_3 py-xgboost 0.90 py37_1 anaconda pyasn1 0.4.8 pypi_0 pypi pyasn1-modules 0.2.8 pypi_0 pypi pycairo 1.19.1 py37h6430cfb_3 conda-forge pycodestyle 2.6.0 py_0 anaconda pycosat 0.6.3 py37_3 intel pycparser 2.18 py37_2 intel pycrypto 2.6.1 py37hfa6e2cd_9 pyct 0.4.6 py_0 conda-forge pyct-core 0.4.6 py_0 conda-forge pycurl 7.43.0.5 py37h7a1dbc1_0 pydocstyle 4.0.1 py_0 pydotplus 2.0.2 py_3 anaconda pyflakes 2.2.0 py_0 anaconda pygments 2.5.2 py_0 pygobject 3.36.1 py37hf6b2db1_0 conda-forge pylint 2.4.4 py37_0 pynacl 1.3.0 py37h62dcd97_0 pynndescent 0.4.8 py_1 anaconda pyodbc 4.0.30 py37ha925a31_0 pyopenssl 17.5.0 py37_2 intel pyparsing 2.2.0 py37_2 intel pyperclip 1.7.0 py_0 conda-forge pyproj 2.3.1 py37he1416cd_0 conda-forge/label/cf202003 pyqt 5.9.2 py37h6538335_2 pyreadline 2.1 py37_1 pyrsistent 0.15.7 py37he774522_0 pysocks 1.6.7 py37_1 intel pytables 3.5.2 py37h6a20dd8_0 conda-forge/label/cf202003 pytest 5.3.5 py37_0 pytest-arraydiff 0.3 py37h39e3cac_0 pytest-astropy 0.8.0 py_0 pytest-astropy-header 0.1.2 py_0 pytest-doctestplus 0.5.0 py_0 pytest-openfiles 0.4.0 py_0 pytest-remotedata 0.3.2 py37_0 python 3.7.6 h60c2a47_2 python-dateutil 2.8.0 py37_0 intel python-editor 1.0.4 py_0 python-jsonrpc-server 0.3.4 py_0 python-language-server 0.34.1 py37_0 anaconda python-libarchive-c 2.8 py37_13 intel python_abi 3.7 1_cp37m conda-forge pytz 2019.1 py37_0 intel pyviz_comms 0.7.5 pyh9f0ad1d_0 conda-forge pywavelets 1.1.1 py37he774522_0 pywin32 224 py37hfa6e2cd_1002 intel pywin32-ctypes 0.2.0 py37_1000 pywinpty 0.5.7 py37_0 pyyaml 5.1.1 py37_0 intel pyzmq 18.1.1 py37ha925a31_0 qdarkstyle 2.8 py_0 qt 5.9.7 vc14h73c81de_0 [vc14] qtawesome 0.6.1 py_0 qtconsole 4.6.0 py37_1 qtpy 1.9.0 py_0 requests 2.23.0 pypi_0 pypi requests-oauthlib 1.3.0 pypi_0 pypi retrying 1.3.3 py37_2 rope 0.16.0 py_0 rsa 4.0 pypi_0 pypi rtree 0.9.3 py37h21ff451_0 ruamel_yaml 0.15.64 py37_1 intel s3transfer 0.1.13 py37_0 anaconda scikit-image 0.16.2 py37h47e9c7a_0 scikit-learn 0.23.1 py37h25d0782_0 scikit-surprise 1.1.0 py37hbc2f12b_1002 conda-forge scipy 1.4.1 pypi_0 pypi seaborn 0.10.0 py_0 send2trash 1.5.0 py37_0 setuptools 41.0.1 py37_0 intel shapely 1.6.4 py37ha35856d_1006 conda-forge/label/cf202003 simplegeneric 0.8.1 py37_2 singledispatch 3.4.0.3 py37_0 sip 4.19.8 py37h6538335_0 six 1.15.0 py_0 anaconda snappy 1.1.7 h777316e_3 snowballstemmer 2.0.0 py_0 sortedcollections 1.1.2 py37_0 sortedcontainers 2.1.0 py37_0 soupsieve 1.9.5 py37_0 sphinx 2.3.1 py_0 sphinxcontrib 1.0 py37_1 sphinxcontrib-applehelp 1.0.1 py_0 sphinxcontrib-devhelp 1.0.1 py_0 sphinxcontrib-htmlhelp 1.0.2 py_0 sphinxcontrib-jsmath 1.0.1 py_0 sphinxcontrib-qthelp 1.0.2 py_0 sphinxcontrib-serializinghtml 1.1.3 py_0 sphinxcontrib-websupport 1.2.0 py_0 spyder 4.1.4 py37_0 anaconda spyder-kernels 1.9.2 py37_0 anaconda spyder-terminal 0.3.1 py37hc8dfbb8_1 spyder-ide sqlalchemy 1.3.13 py37he774522_0 sqlite 3.31.1 he774522_0 statsmodels 0.11.0 py37he774522_0 stevedore 1.30.1 py_0 conda-forge stumpy 1.3.0 py_0 conda-forge sympy 1.5.1 py37_0 tangled-up-in-unicode 0.0.6 pyh9f0ad1d_0 conda-forge tbb 2020.0 vc14_intel_166 [vc14] intel tbb4py 2020.0 py37_intel_0 [vc14] intel tblib 1.6.0 py_0 tensorboard 2.1.0 pypi_0 pypi tensorflow 2.1.0 pypi_0 pypi tensorflow-estimator 2.1.0 pypi_0 pypi tensorflow-gpu 2.1.0 pypi_0 pypi tensorflow-gpu-estimator 2.1.0 pypi_0 pypi termcolor 1.1.0 pypi_0 pypi terminado 0.8.3 py37_0 testpath 0.4.4 py_0 threadpoolctl 2.1.0 pyh5ca1d4c_0 tk 8.6.8 hfa6e2cd_0 toml 0.10.1 py_0 toolz 0.10.0 py_0 tornado 6.0.3 py37he774522_3 tqdm 4.47.0 pyh9f0ad1d_0 conda-forge traitlets 4.3.3 py37_0 tslearn 0.3.1 py37hbc2f12b_0 conda-forge typing 3.6.4 py37_0 typing_extensions 3.7.4.2 py_0 conda-forge ujson 1.35 py37hfa6e2cd_0 umap-learn 0.4.4 py37hc8dfbb8_0 conda-forge unicodecsv 0.14.1 py37_0 urllib3 1.24.1 py37_2 intel vc 14.1 h0510ff6_4 visions 0.4.4 pyh9f0ad1d_0 conda-forge vs2015_runtime 14.16.27012 hf0eaf9b_1 watchdog 0.10.2 py37_0 wcwidth 0.1.8 py_0 webencodings 0.5.1 py37_1 werkzeug 1.0.0 py_0 wheel 0.31.0 py37_3 intel whichcraft 0.6.1 py_0 conda-forge widgetsnbextension 3.5.1 py37_0 win_inet_pton 1.0.1 py37_4 intel win_unicode_console 0.5 py37_0 wincertstore 0.2 py37_3 intel winpty 0.4.3 4 wrapt 1.11.2 py37he774522_0 xarray 0.15.1 py_0 conda-forge xerces-c 3.2.2 h6538335_1004 conda-forge/label/cf202003 xlrd 1.2.0 py37_0 xlsxwriter 1.2.7 py_0 xlwings 0.17.1 py37_0 xlwt 1.3.0 py37_0 xz 5.2.4 h2fa13f4_7 intel yaml 0.1.7 2 intel yapf 0.28.0 py_0 zeromq 4.3.1 h33f27b4_3 zict 1.0.0 py_0 zipp 2.2.0 py_0 zlib 1.2.11 vc14hfa6e2cd_7 [vc14] intel zstd 1.3.7 h508b16e_0`

Working env: `(keras-gpu-3) C:\Users\bbate>conda list

packages in environment at C:\Users\bbate\Miniconda3\envs\keras-gpu-3:

#

Name Version Build Channel

_anaconda_depends 2019.03 py37_0 _py-xgboost-mutex 2.0 cpu_0 absl-py 0.9.0 pypi_0 pypi adjusttext 0.7.3 pypi_0 pypi alabaster 0.7.12 py37_0 alembic 1.4.0 py_0 conda-forge anaconda custom py37_1 anaconda-client 1.7.2 py37_0 anaconda-project 0.8.4 py_0 argh 0.26.2 py37_0 arrow 0.15.6 py37hc8dfbb8_1 conda-forge asn1crypto 0.24.0 py37_3 intel astor 0.8.1 pypi_0 pypi astroid 2.3.3 py37_0 astropy 4.0 py37he774522_0 atomicwrites 1.3.0 py37_1 attrs 19.3.0 py_0 autopep8 1.4.4 py_0 babel 2.8.0 py_0 backcall 0.1.0 py37_0 backports 1.0 py_2 backports.os 0.1.1 py37_0 backports.shutil_get_terminal_size 1.0.0 py37_2 bcrypt 3.1.7 py37he774522_0 beautifulsoup4 4.8.2 py37_0 binaryornot 0.4.4 py_1 conda-forge bitarray 1.2.1 py37he774522_0 bkcharts 0.2 py37_0 blas 1.0 mkl bleach 3.1.0 py37_0 blosc 1.16.3 h7bd577a_0 bokeh 2.1.0 py37hc8dfbb8_0 conda-forge boost-cpp 1.72.0 h0caebb8_0 conda-forge/label/cf202003 boto 2.49.0 py37_0 boto3 1.9.66 py37_0 anaconda botocore 1.12.189 py_0 bottleneck 1.3.2 py37h2a96729_0 brotlipy 0.7.0 py37h4ab8f01_1000 conda-forge bs4 0.0.1 pypi_0 pypi bzip2 1.0.8 he774522_0 ca-certificates 2020.6.20 hecda079_0 conda-forge cachetools 4.0.0 pypi_0 pypi cairo 1.16.0 h63a05c6_1001 conda-forge certifi 2020.6.20 py37hc8dfbb8_0 conda-forge cffi 1.12.3 py37_2 intel cfitsio 3.470 hfa6e2cd_2 conda-forge/label/cf202003 chardet 3.0.4 py37_3 intel click 7.0 py37_0 click-plugins 1.1.1 py_0 conda-forge/label/cf202003 cliff 2.15.0 py37_0 conda-forge cligj 0.5.0 py_0 conda-forge/label/cf202003 cloudpickle 1.3.0 py_0 clyent 1.2.2 py37_1 cmd2 0.9.15 py37_0 conda-forge colorama 0.4.3 py_0 colorcet 2.0.1 py_0 conda-forge coloredlogs 10.0 py37_0 colorlog 4.1.0 py37_1 conda-forge comtypes 1.1.7 py37_0 confuse 1.3.0 pyh9f0ad1d_0 conda-forge console_shortcut 0.1.1 4 contextlib2 0.6.0.post1 py_0 cookiecutter 1.6.0 py37_1000 conda-forge cryptography 2.7 py37_0 intel curl 7.68.0 h4496350_0 conda-forge/label/cf202003 cycler 0.10.0 py37_7 intel cython 0.29.13 py37ha68da19_0 intel cytoolz 0.10.1 py37he774522_0 daal 2020.0 intel_166 intel daal4py 2020.0 py37ha68da19_8 intel dask 2.11.0 py_0 dask-core 2.11.0 py_0 datashader 0.11.0 pyh9f0ad1d_0 conda-forge datashape 0.5.4 py_1 conda-forge decorator 4.4.1 py_0 defusedxml 0.6.0 py_0 descartes 1.1.0 py_4 conda-forge diff-match-patch 20181111 py_0 distributed 2.11.0 py37_0 docutils 0.16 py37_0 entrypoints 0.3 py37_0 et_xmlfile 1.0.1 py37_0 expat 2.2.9 he025d50_2 conda-forge/label/cf202003 fastcache 1.1.0 py37he774522_0 ffmpeg 4.2.3 ha925a31_0 conda-forge filelock 3.0.12 py_0 fiona 1.8.9.post2 py37h3234bc7_0 conda-forge/label/cf202003 flake8 3.7.9 py37_0 flask 1.1.1 py_0 flask-compress 1.4.0 pypi_0 pypi freetype 2.10.1 1 intel freexl 1.0.5 hd288d7e_1002 conda-forge/label/cf202003 fsspec 0.6.2 py_0 future 0.18.2 py37_0 gast 0.2.2 pypi_0 pypi gdal 2.4.2 py37he6b6c38_8 conda-forge/label/cf202003 geopandas 0.7.0 py_1 conda-forge/label/cf202003 geos 3.7.2 he025d50_2 conda-forge/label/cf202003 geotiff 1.5.1 h4b1d854_3 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python-jsonrpc-server 0.3.4 py_0 python-language-server 0.31.9 py37_0 python-libarchive-c 2.8 py37_13 intel python_abi 3.7 1_cp37m conda-forge pytz 2019.1 py37_0 intel pyviz_comms 0.7.5 pyh9f0ad1d_0 conda-forge pywavelets 1.1.1 py37he774522_0 pywin32 224 py37hfa6e2cd_1002 intel pywin32-ctypes 0.2.0 py37_1000 pywinpty 0.5.7 py37_0 pyyaml 5.1.1 py37_0 intel pyzmq 18.1.1 py37ha925a31_0 qdarkstyle 2.8 py_0 qt 5.9.7 vc14h73c81de_0 [vc14] qtawesome 0.6.1 py_0 qtconsole 4.6.0 py37_1 qtpy 1.9.0 py_0 requests 2.23.0 pypi_0 pypi requests-oauthlib 1.3.0 pypi_0 pypi retrying 1.3.3 py37_2 rope 0.16.0 py_0 rsa 4.0 pypi_0 pypi rtree 0.9.3 py37h21ff451_0 ruamel_yaml 0.15.64 py37_1 intel s3transfer 0.1.13 py37_0 anaconda scikit-image 0.16.2 py37h47e9c7a_0 scikit-learn 0.23.1 py37h25d0782_0 scikit-surprise 1.1.0 py37hbc2f12b_1002 conda-forge scipy 1.4.1 pypi_0 pypi seaborn 0.10.0 py_0 send2trash 1.5.0 py37_0 setuptools 41.0.1 py37_0 intel shapely 1.6.4 py37ha35856d_1006 conda-forge/label/cf202003 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py37he774522_0 xarray 0.15.1 py_0 conda-forge xerces-c 3.2.2 h6538335_1004 conda-forge/label/cf202003 xlrd 1.2.0 py37_0 xlsxwriter 1.2.7 py_0 xlwings 0.17.1 py37_0 xlwt 1.3.0 py37_0 xz 5.2.4 h2fa13f4_7 intel yaml 0.1.7 2 intel yapf 0.28.0 py_0 zeromq 4.3.1 h33f27b4_3 zict 1.0.0 py_0 zipp 2.2.0 py_0 zlib 1.2.11 vc14hfa6e2cd_7 [vc14] intel zstd 1.3.7 h508b16e_0`

ccordoba12 commented 4 years ago

File "C:\Users\bbate\Miniconda3\envs\keras-gpu-4\lib\site-packages\spyder\plugins\pylint\widgets\pylintgui.py", line 279, in set_filename self.curr_filenames.pop(index) IndexError: pop index out of range

@eafpres, to fix this error you need to remove the file 

C:\Users\bbate\.spyder-py3-dev\pylint.results

[22624:9332:0811/165253.834:ERROR:broker_win.cc(59)] Error reading broker pipe: The pipe has been ended. (0x6D) [13940:21200:0811/165253.834:ERROR:broker_win.cc(59)] Error reading broker pipe: The pipe has been ended. (0x6D)

This one could be caused because you're mixing conda, conda-forge and pip packages. I'd suggest you to use a single package manager to install all your dependencies.

eafpres commented 4 years ago

I'd suggest you to use a single package manager to install all your dependencies.

I agree. Unfortunately a few things won’t install via conda. It’s a frustrating situation, I much prefer working in conda setup.

eafpres commented 4 years ago

I was able to fix by removing this file: C:\Users\bbate\.spyder-py3\pylint.results

Removing the one in .spyder-py3-dev did not work