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spyder-ide / spyder

Official repository for Spyder - The Scientific Python Development Environment
https://www.spyder-ide.org
MIT License
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No idea what's wrong #17867

Closed Lehong-Wang closed 2 years ago

Lehong-Wang commented 2 years ago

Description

What steps will reproduce the problem?

i don't know what happened. I just pip installed spyder-kernels 2.3.0, and refreshed the console

Traceback

A large number of repetitions of:

Exception in comms call flush_std:
  File "/Users/lhwang/.pyenv/versions/3.10.4/lib/python3.10/site-packages/spyder_kernels/comms/commbase.py", line 340, in _handle_remote_call
    msg_dict = msg['content']
  File "/Users/lhwang/.pyenv/versions/3.10.4/lib/python3.10/site-packages/spyder_kernels/comms/commbase.py", line 356, in _remote_callback
    return self._remote_call_handlers[call_name](
spyder_kernels.comms.commbase.CommError: No such spyder call type: flush_std

Versions

Dependencies

# Mandatory:
applaunchservices >=0.1.7            :  0.2.1 (OK)
atomicwrites >=1.2.0                 :  1.4.0 (OK)
chardet >=2.0.0                      :  4.0.0 (OK)
cloudpickle >=0.5.0                  :  2.0.0 (OK)
cookiecutter >=1.6.0                 :  1.7.3 (OK)
diff_match_patch >=20181111          :  20200713 (OK)
intervaltree >=3.0.2                 :  3.1.0 (OK)
IPython >=7.31.1;<8.0.0              :  7.32.0 (OK)
jedi >=0.17.2;<0.19.0                :  0.18.1 (OK)
jellyfish >=0.7                      :  0.9.0 (OK)
jsonschema >=3.2.0                   :  4.4.0 (OK)
keyring >=17.0.0                     :  23.5.0 (OK)
nbconvert >=4.0                      :  6.4.5 (OK)
numpydoc >=0.6.0                     :  1.2.1 (OK)
parso >=0.7.0;<0.9.0                 :  0.8.3 (OK)
pexpect >=4.4.0                      :  4.8.0 (OK)
pickleshare >=0.4                    :  0.7.5 (OK)
psutil >=5.3                         :  5.9.0 (OK)
pygments >=2.0                       :  2.11.2 (OK)
pylint >=2.5.0                       :  2.13.3 (OK)
pyls_spyder >=0.4.0                  :  0.4.0 (OK)
pylsp >=1.4.1;<1.5.0                 :  1.4.1 (OK)
pylsp_black >=1.2.0                  :  1.2.0 (OK)
qdarkstyle >=3.0.2;<3.1.0            :  3.0.3 (OK)
qstylizer >=0.1.10                   :  0.2.1 (OK)
qtawesome >=1.0.2                    :  1.1.1 (OK)
qtconsole >=5.3.0;<5.4.0             :  5.3.0 (OK)
qtpy >=2.0.1                         :  2.0.1 (OK)
rtree >=0.9.7                        :  0.9.7 (OK)
setuptools >=49.6.0                  :  60.10.0 (OK)
sphinx >=0.6.6                       :  4.5.0 (OK)
spyder_kernels >=2.3.0;<2.4.0        :  2.3.0 (OK)
textdistance >=4.2.0                 :  4.2.2 (OK)
three_merge >=0.1.1                  :  0.1.1 (OK)
watchdog >=0.10.3                    :  2.1.7 (OK)
zmq >=17                             :  22.3.0 (OK)

# Optional:
cython >=0.21                        :  0.29.28 (OK)
matplotlib >=3.0.0                   :  3.5.1 (OK)
numpy >=1.7                          :  1.22.3 (OK)
pandas >=1.1.1                       :  1.4.1 (OK)
scipy >=0.17.0                       :  1.8.0 (OK)
sympy >=0.7.3                        :  1.10.1 (OK)

# Spyder plugins:
spyder_terminal.terminalplugin 1.2.2 :  1.2.2 (OK)
dalthviz commented 2 years ago

Hi @Lehong-Wang thank you for the feedback! Quite strange indeed I'm not totally sure what could be happening :/ Are you using the standalone MacOS installer? Could you share with use the pip list output of your custom interpreter? Also pinging @mrclary and @impact27 (maybe they could have some ideas)

mrclary commented 2 years ago

@Lehong-Wang, in addition to what @dalthviz mentioned, What pyenv environments do you have? At the command line:

$ pyenv versions
  system
* 3.10.3 (set by /Users/rclary/.pyenv/version)
  3.10.3/envs/spy-build
  spy-build

Can you confirm that the Python interpreter in Spyder correctly points to the environment you are trying to use? I know that there is an issue where selecting the Python interpreter (which may be a symlink) resolves to a path outside the environment. Following is an example of a virtual environment I have called "spy-build".

Screen Shot 2022-05-13 at 10 48 13 AM
ccordoba12 commented 2 years ago

@Lehong-Wang, if you updated spyder-kernels while Spyder was running, then you need to close it and open it again. That could solve your problem.

Lehong-Wang commented 2 years ago

Hi, Thank you so much for answering my question. Restarting Spyder did solve the problem! : )
Sorry about the problem being so dumb.

Also, here is the result of pip list:

pip list ``` Package Version ------------------------------------------------- ----------- aiohttp 3.8.1 aiosignal 1.2.0 alabaster 0.7.12 anyio 3.5.0 applaunchservices 0.2.1 appnope 0.1.3 argon2-cffi 21.3.0 argon2-cffi-bindings 21.2.0 arrow 1.2.2 astroid 2.11.5 asttokens 2.0.5 async-timeout 4.0.2 atomicwrites 1.4.0 attrs 21.4.0 autobahn 21.11.1 autopep8 1.6.0 Babel 2.10.1 backcall 0.2.0 beautifulsoup4 4.11.1 binaryornot 0.4.4 black 22.3.0 bleach 5.0.0 certifi 2021.10.8 cffi 1.15.0 chardet 4.0.0 charset-normalizer 2.0.12 click 8.1.3 cloudpickle 2.0.0 cookiecutter 1.7.3 cryptography 37.0.2 debugpy 1.6.0 decorator 5.1.1 defusedxml 0.7.1 diff-match-patch 20200713 dill 0.3.4 docutils 0.17.1 entrypoints 0.4 executing 0.8.3 fastjsonschema 2.15.3 flake8 4.0.1 frozenlist 1.3.0 hyperlink 21.0.0 idna 3.3 imagesize 1.3.0 importlib-metadata 4.11.3 inflection 0.5.1 intervaltree 3.1.0 ipykernel 6.13.0 ipython 7.33.0 ipython-genutils 0.2.0 ipywidgets 7.7.0 isort 5.10.1 jedi 0.18.1 jellyfish 0.9.0 Jinja2 3.1.2 jinja2-time 0.2.0 jsonschema 4.5.1 jupyter 1.0.0 jupyter-client 7.3.1 jupyter-console 6.4.3 jupyter-core 4.10.0 jupyter-server 1.17.0 jupyter-server-proxy 3.2.1 jupyterlab-pygments 0.2.2 jupyterlab-widgets 1.1.0 keyring 23.5.0 lazy-object-proxy 1.7.1 MarkupSafe 2.1.1 matplotlib-inline 0.1.3 mccabe 0.6.1 mistune 0.8.4 multidict 6.0.2 mypy-extensions 0.4.3 nbclient 0.6.3 nbconvert 6.5.0 nbformat 5.4.0 nest-asyncio 1.5.5 notebook 6.4.11 numpy 1.22.3 numpy-stl 2.17.0 numpydoc 1.3.1 packaging 21.3 pandocfilters 1.5.0 parso 0.8.3 pathspec 0.9.0 pexpect 4.8.0 pickleshare 0.7.5 pip 22.1 platformdirs 2.5.2 pluggy 1.0.0 poyo 0.5.0 prometheus-client 0.14.1 prompt-toolkit 3.0.29 psutil 5.9.0 ptyprocess 0.7.0 pure-eval 0.2.2 pycodestyle 2.8.0 pycparser 2.21 pydocstyle 6.1.1 pyflakes 2.4.0 Pygments 2.12.0 pylint 2.13.8 pyls-spyder 0.4.0 pyobjc 8.5 pyobjc-core 8.5 pyobjc-framework-Accessibility 8.5 pyobjc-framework-Accounts 8.5 pyobjc-framework-AddressBook 8.5 pyobjc-framework-AdServices 8.5 pyobjc-framework-AdSupport 8.5 pyobjc-framework-AppleScriptKit 8.5 pyobjc-framework-AppleScriptObjC 8.5 pyobjc-framework-ApplicationServices 8.5 pyobjc-framework-AppTrackingTransparency 8.5 pyobjc-framework-AudioVideoBridging 8.5 pyobjc-framework-AuthenticationServices 8.5 pyobjc-framework-AutomaticAssessmentConfiguration 8.5 pyobjc-framework-Automator 8.5 pyobjc-framework-AVFoundation 8.5 pyobjc-framework-AVKit 8.5 pyobjc-framework-BusinessChat 8.5 pyobjc-framework-CalendarStore 8.5 pyobjc-framework-CallKit 8.5 pyobjc-framework-CFNetwork 8.5 pyobjc-framework-ClassKit 8.5 pyobjc-framework-CloudKit 8.5 pyobjc-framework-Cocoa 8.5 pyobjc-framework-Collaboration 8.5 pyobjc-framework-ColorSync 8.5 pyobjc-framework-Contacts 8.5 pyobjc-framework-ContactsUI 8.5 pyobjc-framework-CoreAudio 8.5 pyobjc-framework-CoreAudioKit 8.5 pyobjc-framework-CoreBluetooth 8.5 pyobjc-framework-CoreData 8.5 pyobjc-framework-CoreHaptics 8.5 pyobjc-framework-CoreLocation 8.5 pyobjc-framework-CoreMedia 8.5 pyobjc-framework-CoreMediaIO 8.5 pyobjc-framework-CoreMIDI 8.5 pyobjc-framework-CoreML 8.5 pyobjc-framework-CoreMotion 8.5 pyobjc-framework-CoreServices 8.5 pyobjc-framework-CoreSpotlight 8.5 pyobjc-framework-CoreText 8.5 pyobjc-framework-CoreWLAN 8.5 pyobjc-framework-CryptoTokenKit 8.5 pyobjc-framework-DeviceCheck 8.5 pyobjc-framework-DictionaryServices 8.5 pyobjc-framework-DiscRecording 8.5 pyobjc-framework-DiscRecordingUI 8.5 pyobjc-framework-DiskArbitration 8.5 pyobjc-framework-DVDPlayback 8.5 pyobjc-framework-EventKit 8.5 pyobjc-framework-ExceptionHandling 8.5 pyobjc-framework-ExecutionPolicy 8.5 pyobjc-framework-ExternalAccessory 8.5 pyobjc-framework-FileProvider 8.5 pyobjc-framework-FileProviderUI 8.5 pyobjc-framework-FinderSync 8.5 pyobjc-framework-FSEvents 8.5 pyobjc-framework-GameCenter 8.5 pyobjc-framework-GameController 8.5 pyobjc-framework-GameKit 8.5 pyobjc-framework-GameplayKit 8.5 pyobjc-framework-ImageCaptureCore 8.5 pyobjc-framework-IMServicePlugIn 8.5 pyobjc-framework-InputMethodKit 8.5 pyobjc-framework-InstallerPlugins 8.5 pyobjc-framework-InstantMessage 8.5 pyobjc-framework-Intents 8.5 pyobjc-framework-IOSurface 8.5 pyobjc-framework-iTunesLibrary 8.5 pyobjc-framework-KernelManagement 8.5 pyobjc-framework-LatentSemanticMapping 8.5 pyobjc-framework-LaunchServices 8.5 pyobjc-framework-libdispatch 8.5 pyobjc-framework-LinkPresentation 8.5 pyobjc-framework-LocalAuthentication 8.5 pyobjc-framework-MapKit 8.5 pyobjc-framework-MediaAccessibility 8.5 pyobjc-framework-MediaLibrary 8.5 pyobjc-framework-MediaPlayer 8.5 pyobjc-framework-MediaToolbox 8.5 pyobjc-framework-Metal 8.5 pyobjc-framework-MetalKit 8.5 pyobjc-framework-MetalPerformanceShaders 8.5 pyobjc-framework-MetalPerformanceShadersGraph 8.5 pyobjc-framework-MLCompute 8.5 pyobjc-framework-ModelIO 8.5 pyobjc-framework-MultipeerConnectivity 8.5 pyobjc-framework-NaturalLanguage 8.5 pyobjc-framework-NetFS 8.5 pyobjc-framework-Network 8.5 pyobjc-framework-NetworkExtension 8.5 pyobjc-framework-NotificationCenter 8.5 pyobjc-framework-OpenDirectory 8.5 pyobjc-framework-OSAKit 8.5 pyobjc-framework-OSLog 8.5 pyobjc-framework-PassKit 8.5 pyobjc-framework-PencilKit 8.5 pyobjc-framework-Photos 8.5 pyobjc-framework-PhotosUI 8.5 pyobjc-framework-PreferencePanes 8.5 pyobjc-framework-PushKit 8.5 pyobjc-framework-Quartz 8.5 pyobjc-framework-QuickLookThumbnailing 8.5 pyobjc-framework-ReplayKit 8.5 pyobjc-framework-SafariServices 8.5 pyobjc-framework-SceneKit 8.5 pyobjc-framework-ScreenSaver 8.5 pyobjc-framework-ScreenTime 8.5 pyobjc-framework-ScriptingBridge 8.5 pyobjc-framework-SearchKit 8.5 pyobjc-framework-Security 8.5 pyobjc-framework-SecurityFoundation 8.5 pyobjc-framework-SecurityInterface 8.5 pyobjc-framework-ServiceManagement 8.5 pyobjc-framework-Social 8.5 pyobjc-framework-SoundAnalysis 8.5 pyobjc-framework-Speech 8.5 pyobjc-framework-SpriteKit 8.5 pyobjc-framework-StoreKit 8.5 pyobjc-framework-SyncServices 8.5 pyobjc-framework-SystemConfiguration 8.5 pyobjc-framework-SystemExtensions 8.5 pyobjc-framework-UniformTypeIdentifiers 8.5 pyobjc-framework-UserNotifications 8.5 pyobjc-framework-UserNotificationsUI 8.5 pyobjc-framework-VideoSubscriberAccount 8.5 pyobjc-framework-VideoToolbox 8.5 pyobjc-framework-Virtualization 8.5 pyobjc-framework-Vision 8.5 pyobjc-framework-WebKit 8.5 pyparsing 3.0.9 PyQt5 5.15.6 PyQt5-Qt5 5.15.2 PyQt5-sip 12.10.1 PyQtWebEngine 5.15.5 PyQtWebEngine-Qt5 5.15.2 pyrsistent 0.18.1 python-dateutil 2.8.2 python-lsp-black 1.2.1 python-lsp-jsonrpc 1.0.0 python-lsp-server 1.4.1 python-math 0.0.1 python-slugify 6.1.2 python-utils 3.2.0 pytz 2022.1 pyzmq 22.3.0 QDarkStyle 3.0.3 qstylizer 0.2.1 QtAwesome 1.1.1 qtconsole 5.3.0 QtPy 2.1.0 requests 2.27.1 rope 1.0.0 Rtree 1.0.0 Send2Trash 1.8.0 setuptools 62.2.0 simpervisor 0.4 six 1.16.0 sniffio 1.2.0 snowballstemmer 2.2.0 sortedcontainers 2.4.0 soupsieve 2.3.2.post1 Sphinx 4.5.0 sphinxcontrib-applehelp 1.0.2 sphinxcontrib-devhelp 1.0.2 sphinxcontrib-htmlhelp 2.0.0 sphinxcontrib-jsmath 1.0.1 sphinxcontrib-qthelp 1.0.3 sphinxcontrib-serializinghtml 1.1.5 spyder 5.3.0 spyder-kernels 2.3.0 stack-data 0.2.0 terminado 0.13.3 text-unidecode 1.3 textdistance 4.2.2 three-merge 0.1.1 tinycss2 1.1.1 toml 0.10.2 tomli 2.0.1 tornado 6.1 traitlets 5.2.0 txaio 22.2.1 ujson 5.2.0 urllib3 1.26.9 vpython 7.6.3 watchdog 2.1.7 wcwidth 0.2.5 webencodings 0.5.1 websocket-client 1.3.2 widgetsnbextension 3.6.0 wrapt 1.14.1 wurlitzer 3.0.2 yapf 0.32.0 yarl 1.7.2 zipp 3.8.0 ```

and the version of pyenv: 3.10.4 (set by /Users/lhwang/.pyenv/version)

and the path I did set the correct path to python interpreter.

Thanks, Lehong

mrclary commented 2 years ago

@Lehong-Wang I'm glad it is now working for you!

I'm going to close this issue, but if there are any further complications, you may reopen this issue or open another.