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Official repository for Spyder - The Scientific Python Development Environment
https://www.spyder-ide.org
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Import Error in Spyder #22667

Closed briancooke01 closed 1 month ago

briancooke01 commented 1 month ago

Description

What steps will reproduce the problem?

I was coding in Spyder just like normal and then I got this error:

A module that was compiled using NumPy 1.x cannot be run in NumPy 2.1.2 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'.

If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2.

Traceback (most recent call last): File "/opt/anaconda3/lib/python3.11/site-packages/spyder/plugins/application/container.py", line 414, in _compute_dependencies dependencies.declare_dependencies() File "/opt/anaconda3/lib/python3.11/site-packages/spyder/dependencies.py", line 453, in declare_dependencies add(dep['modname'], dep['package_name'], File "/opt/anaconda3/lib/python3.11/site-packages/spyder/dependencies.py", line 384, in add DEPENDENCIES += [Dependency(modname, package_name, features, File "/opt/anaconda3/lib/python3.11/site-packages/spyder/dependencies.py", line 326, in init self.installed_version = programs.get_module_version(modname) File "/opt/anaconda3/lib/python3.11/site-packages/spyder/utils/programs.py", line 839, in get_module_version mod = import(module_name) File "/opt/anaconda3/lib/python3.11/site-packages/matplotlib/init.py", line 161, in from . import _api, _version, cbook, _docstring, rcsetup File "/opt/anaconda3/lib/python3.11/site-packages/matplotlib/rcsetup.py", line 27, in from matplotlib.colors import Colormap, is_color_like File "/opt/anaconda3/lib/python3.11/site-packages/matplotlib/colors.py", line 57, in from matplotlib import _api, _cm, cbook, scale File "/opt/anaconda3/lib/python3.11/site-packages/matplotlib/scale.py", line 22, in from matplotlib.ticker import ( File "/opt/anaconda3/lib/python3.11/site-packages/matplotlib/ticker.py", line 143, in from matplotlib import transforms as mtransforms File "/opt/anaconda3/lib/python3.11/site-packages/matplotlib/transforms.py", line 49, in from matplotlib._path import ( AttributeError: _ARRAY_API not found

A module that was compiled using NumPy 1.x cannot be run in NumPy 2.1.2 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'.

If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2.

Traceback (most recent call last): File "/opt/anaconda3/lib/python3.11/site-packages/spyder/plugins/application/container.py", line 414, in _compute_dependencies dependencies.declare_dependencies() File "/opt/anaconda3/lib/python3.11/site-packages/spyder/dependencies.py", line 453, in declare_dependencies add(dep['modname'], dep['package_name'], File "/opt/anaconda3/lib/python3.11/site-packages/spyder/dependencies.py", line 384, in add DEPENDENCIES += [Dependency(modname, package_name, features, File "/opt/anaconda3/lib/python3.11/site-packages/spyder/dependencies.py", line 326, in init self.installed_version = programs.get_module_version(modname) File "/opt/anaconda3/lib/python3.11/site-packages/spyder/utils/programs.py", line 839, in get_module_version mod = import(module_name) File "/opt/anaconda3/lib/python3.11/site-packages/pandas/init.py", line 23, in from pandas.compat import ( File "/opt/anaconda3/lib/python3.11/site-packages/pandas/compat/init.py", line 27, in from pandas.compat.pyarrow import ( File "/opt/anaconda3/lib/python3.11/site-packages/pandas/compat/pyarrow.py", line 8, in import pyarrow as pa File "/opt/anaconda3/lib/python3.11/site-packages/pyarrow/init.py", line 65, in import pyarrow.lib as _lib AttributeError: _ARRAY_API not found

I'm not sure exactly what it came from. I was installing and importing various packages.

pip install numpy -I

import seaborn as sns import matplotlib.pyplot as plt import nltk from nltk.sentiment.vader import SentimentIntensityAnalyzer from nltk.corpus import stopwords from nltk.tokenize import word_tokenize from nltk.stem import WordNetLemmatizer import nltk

nltk.download('all')

!pip install textblob

from textblob import TextBlob import pandas as pd import nltk import re import string

!pip install wordcloud

from wordcloud import WordCloud

nltk.download('punkt')

import os os.getcwd()

These packages are what I was trying to install and then suddenly all of my codes were receiving error messages.

Traceback


A module that was compiled using NumPy 1.x cannot be run in
NumPy 2.1.2 as it may crash. To support both 1.x and 2.x
versions of NumPy, modules must be compiled with NumPy 2.0.
Some module may need to rebuild instead e.g. with 'pybind11>=2.12'.

If you are a user of the module, the easiest solution will be to
downgrade to 'numpy<2' or try to upgrade the affected module.
We expect that some modules will need time to support NumPy 2.

Traceback (most recent call last):  File "/opt/anaconda3/lib/python3.11/site-packages/spyder/plugins/application/container.py", line 414, in _compute_dependencies
    dependencies.declare_dependencies()
  File "/opt/anaconda3/lib/python3.11/site-packages/spyder/dependencies.py", line 453, in declare_dependencies
    add(dep['modname'], dep['package_name'],
  File "/opt/anaconda3/lib/python3.11/site-packages/spyder/dependencies.py", line 384, in add
    DEPENDENCIES += [Dependency(modname, package_name, features,
  File "/opt/anaconda3/lib/python3.11/site-packages/spyder/dependencies.py", line 326, in __init__
    self.installed_version = programs.get_module_version(modname)
  File "/opt/anaconda3/lib/python3.11/site-packages/spyder/utils/programs.py", line 839, in get_module_version
    mod = __import__(module_name)
  File "/opt/anaconda3/lib/python3.11/site-packages/matplotlib/__init__.py", line 161, in <module>
    from . import _api, _version, cbook, _docstring, rcsetup
  File "/opt/anaconda3/lib/python3.11/site-packages/matplotlib/rcsetup.py", line 27, in <module>
    from matplotlib.colors import Colormap, is_color_like
  File "/opt/anaconda3/lib/python3.11/site-packages/matplotlib/colors.py", line 57, in <module>
    from matplotlib import _api, _cm, cbook, scale
  File "/opt/anaconda3/lib/python3.11/site-packages/matplotlib/scale.py", line 22, in <module>
    from matplotlib.ticker import (
  File "/opt/anaconda3/lib/python3.11/site-packages/matplotlib/ticker.py", line 143, in <module>
    from matplotlib import transforms as mtransforms
  File "/opt/anaconda3/lib/python3.11/site-packages/matplotlib/transforms.py", line 49, in <module>
    from matplotlib._path import (
AttributeError: _ARRAY_API not found

A module that was compiled using NumPy 1.x cannot be run in
NumPy 2.1.2 as it may crash. To support both 1.x and 2.x
versions of NumPy, modules must be compiled with NumPy 2.0.
Some module may need to rebuild instead e.g. with 'pybind11>=2.12'.

If you are a user of the module, the easiest solution will be to
downgrade to 'numpy<2' or try to upgrade the affected module.
We expect that some modules will need time to support NumPy 2.

Traceback (most recent call last):  File "/opt/anaconda3/lib/python3.11/site-packages/spyder/plugins/application/container.py", line 414, in _compute_dependencies
    dependencies.declare_dependencies()
  File "/opt/anaconda3/lib/python3.11/site-packages/spyder/dependencies.py", line 453, in declare_dependencies
    add(dep['modname'], dep['package_name'],
  File "/opt/anaconda3/lib/python3.11/site-packages/spyder/dependencies.py", line 384, in add
    DEPENDENCIES += [Dependency(modname, package_name, features,
  File "/opt/anaconda3/lib/python3.11/site-packages/spyder/dependencies.py", line 326, in __init__
    self.installed_version = programs.get_module_version(modname)
  File "/opt/anaconda3/lib/python3.11/site-packages/spyder/utils/programs.py", line 839, in get_module_version
    mod = __import__(module_name)
  File "/opt/anaconda3/lib/python3.11/site-packages/pandas/__init__.py", line 23, in <module>
    from pandas.compat import (
  File "/opt/anaconda3/lib/python3.11/site-packages/pandas/compat/__init__.py", line 27, in <module>
    from pandas.compat.pyarrow import (
  File "/opt/anaconda3/lib/python3.11/site-packages/pandas/compat/pyarrow.py", line 8, in <module>
    import pyarrow as pa
  File "/opt/anaconda3/lib/python3.11/site-packages/pyarrow/__init__.py", line 65, in <module>
    import pyarrow.lib as _lib
AttributeError: _ARRAY_API not found

Versions

Dependencies

# Mandatory:
applaunchservices >=0.3.0                        :  0.3.0 (OK)
atomicwrites >=1.2.0                             :  1.4.0 (OK)
chardet >=2.0.0                                  :  4.0.0 (OK)
cloudpickle >=0.5.0                              :  2.2.1 (OK)
cookiecutter >=1.6.0                             :  2.5.0 (OK)
diff_match_patch >=20181111                      :  20200713 (OK)
intervaltree >=3.0.2                             :  3.1.0 (OK)
IPython >=7.31.1,<9.0.0,!=8.8.0,!=8.9.0,!=8.10.0 :  8.20.0 (OK)
jedi >=0.17.2,<0.19.0                            :  0.18.1 (OK)
jellyfish >=0.7                                  :  1.0.1 (OK)
jsonschema >=3.2.0                               :  4.19.2 (OK)
keyring >=17.0.0                                 :  23.13.1 (OK)
nbconvert >=4.0                                  :  7.10.0 (OK)
numpydoc >=0.6.0                                 :  1.5.0 (OK)
parso >=0.7.0,<0.9.0                             :  0.8.3 (OK)
pexpect >=4.4.0                                  :  4.8.0 (OK)
pickleshare >=0.4                                :  0.7.5 (OK)
psutil >=5.3                                     :  5.9.0 (OK)
pygments >=2.0                                   :  2.15.1 (OK)
pylint >=2.5.0,<3.0                              :  2.16.2 (OK)
pylint_venv >=2.1.1                              :  2.3.0 (OK)
pyls_spyder >=0.4.0                              :  0.4.0 (OK)
pylsp >=1.7.2,<1.8.0                             :  1.7.2 (OK)
pylsp_black >=1.2.0                              :  1.2.1 (OK)
qdarkstyle >=3.0.2,<3.2.0                        :  3.0.2 (OK)
qstylizer >=0.2.2                                :  0.2.2 (OK)
qtawesome >=1.2.1                                :  1.2.2 (OK)
qtconsole >=5.4.2,<5.5.0                         :  5.4.2 (OK)
qtpy >=2.1.0                                     :  2.4.1 (OK)
rtree >=0.9.7                                    :  1.0.1 (OK)
setuptools >=49.6.0                              :  68.2.2 (OK)
sphinx >=0.6.6                                   :  5.0.2 (OK)
spyder_kernels >=2.4.3,<2.5.0                    :  2.4.4 (OK)
textdistance >=4.2.0                             :  4.2.1 (OK)
three_merge >=0.1.1                              :  0.1.1 (OK)
watchdog >=0.10.3                                :  2.1.6 (OK)
zmq >=22.1.0                                     :  25.1.2 (OK)

# Optional:
cython >=0.21                                    :  None (NOK)
matplotlib >=3.0.0                               :  None (NOK)
numpy >=1.7                                      :  2.1.2 (OK)
pandas >=1.1.1                                   :  None (NOK)
scipy >=0.17.0                                   :  1.11.4 (OK)
sympy >=0.7.3                                    :  1.12 (OK)

Environment

Environment ``` # packages in environment at /opt/anaconda3: # # Name Version Build Channel _anaconda_depends 2024.02 py311_openblas_1 abseil-cpp 20230802.0 h313beb8_2 aext-assistant 4.0.15 py311hca03da5_jl4_0 aext-assistant-server 4.0.15 py311hca03da5_0 aext-core 4.0.15 py311hca03da5_jl4_0 aext-core-server 4.0.15 py311hca03da5_1 aext-panels 4.0.15 py311hca03da5_0 aext-panels-server 4.0.15 py311hca03da5_0 aext-share-notebook 4.0.15 py311hca03da5_0 aext-share-notebook-server 4.0.15 py311hca03da5_0 aext-shared 4.0.15 py311hca03da5_0 aiobotocore 2.7.0 py311hca03da5_0 aiohappyeyeballs 2.4.2 pypi_0 pypi aiohttp 3.10.6 pypi_0 pypi aioitertools 0.7.1 pyhd3eb1b0_0 aiosignal 1.2.0 pyhd3eb1b0_0 alabaster 0.7.12 pyhd3eb1b0_0 altair 5.0.1 py311hca03da5_0 anaconda-anon-usage 0.4.3 py311hd6b623d_100 anaconda-catalogs 0.2.0 py311hca03da5_0 anaconda-client 1.12.3 py311hca03da5_0 anaconda-cloud-auth 0.5.1 py311hca03da5_0 anaconda-navigator 2.6.3 py311hca03da5_0 anaconda-project 0.11.1 py311hca03da5_0 anaconda-toolbox 4.0.15 py311hca03da5_0 anyio 4.2.0 py311hca03da5_0 aom 3.6.0 h313beb8_0 appdirs 1.4.4 pyhd3eb1b0_0 applaunchservices 0.3.0 py311hca03da5_0 appnope 0.1.2 py311hca03da5_1001 appscript 1.1.2 py311h80987f9_0 apscheduler 3.10.4 pypi_0 pypi archspec 0.2.3 pyhd3eb1b0_0 argon2-cffi 21.3.0 pyhd3eb1b0_0 argon2-cffi-bindings 21.2.0 py311h80987f9_0 arrow 1.2.3 py311hca03da5_1 arrow-cpp 14.0.2 hc7aafb3_1 astroid 2.14.2 py311hca03da5_0 astropy 5.3.4 py311hb9f6ed7_0 asttokens 2.0.5 pyhd3eb1b0_0 async-lru 2.0.4 py311hca03da5_0 atomicwrites 1.4.0 py_0 attrs 23.1.0 py311hca03da5_0 automat 20.2.0 py_0 autopep8 1.6.0 pyhd3eb1b0_1 aws-c-auth 0.6.19 h80987f9_0 aws-c-cal 0.5.20 h80987f9_0 aws-c-common 0.8.5 h80987f9_0 aws-c-compression 0.2.16 h80987f9_0 aws-c-event-stream 0.2.15 h313beb8_0 aws-c-http 0.6.25 h80987f9_0 aws-c-io 0.13.10 h80987f9_0 aws-c-mqtt 0.7.13 h80987f9_0 aws-c-s3 0.1.51 h80987f9_0 aws-c-sdkutils 0.1.6 h80987f9_0 aws-checksums 0.1.13 h80987f9_0 aws-crt-cpp 0.18.16 h313beb8_0 aws-sdk-cpp 1.10.55 h313beb8_0 babel 2.11.0 py311hca03da5_0 backports 1.1 pyhd3eb1b0_0 backports.functools_lru_cache 1.6.4 pyhd3eb1b0_0 backports.tempfile 1.0 pyhd3eb1b0_1 backports.weakref 1.0.post1 py_1 bcrypt 3.2.0 py311h80987f9_1 beautifulsoup4 4.12.2 py311hca03da5_0 binaryornot 0.4.4 pyhd3eb1b0_1 black 23.11.0 py311hca03da5_0 blas 1.0 openblas bleach 4.1.0 pyhd3eb1b0_0 blinker 1.6.2 py311hca03da5_0 blis 1.0.1 pypi_0 pypi blosc 1.21.3 h313beb8_0 bokeh 3.3.4 py311hb6e6a13_0 boltons 23.0.0 py311hca03da5_0 boost-cpp 1.82.0 h48ca7d4_2 botocore 1.31.64 py311hca03da5_0 bottleneck 1.3.7 py311hb9f6ed7_0 brotli 1.0.9 h1a28f6b_7 brotli-bin 1.0.9 h1a28f6b_7 brotli-python 1.0.9 py311h313beb8_7 brunsli 0.1 hc377ac9_1 bzip2 1.0.8 h620ffc9_4 c-ares 1.19.1 h80987f9_0 c-blosc2 2.12.0 h7df6c2f_0 ca-certificates 2024.9.24 hca03da5_0 cachetools 4.2.2 pyhd3eb1b0_0 catalogue 2.0.10 pypi_0 pypi cctools 949.0.1 hc179dcd_25 cctools_osx-arm64 949.0.1 h332cad3_25 certifi 2024.8.30 py311hca03da5_0 cffi 1.16.0 py311h80987f9_0 cfitsio 3.470 h7f6438f_7 chardet 4.0.0 py311hca03da5_1003 charls 2.2.0 hc377ac9_0 charset-normalizer 2.0.4 pyhd3eb1b0_0 click 8.1.7 py311hca03da5_0 cloudpathlib 0.19.0 pypi_0 pypi cloudpickle 2.2.1 py311hca03da5_0 clyent 1.2.2 py311hca03da5_1 colorama 0.4.6 py311hca03da5_0 colorcet 3.0.1 py311hca03da5_0 comm 0.1.2 py311hca03da5_0 conda 24.9.1 py311hca03da5_0 conda-build 24.1.2 py311hca03da5_0 conda-content-trust 0.2.0 py311hca03da5_0 conda-index 0.4.0 pyhd3eb1b0_0 conda-libmamba-solver 24.1.0 pyhd3eb1b0_0 conda-pack 0.6.0 pyhd3eb1b0_0 conda-package-handling 2.2.0 py311hca03da5_0 conda-package-streaming 0.9.0 py311hca03da5_0 conda-repo-cli 1.0.75 py311hca03da5_0 conda-token 0.4.0 pyhd3eb1b0_0 conda-verify 3.4.2 py_1 confection 0.1.5 pypi_0 pypi constantly 23.10.4 py311hca03da5_0 contourpy 1.2.0 py311h48ca7d4_0 cookiecutter 2.5.0 py311hca03da5_0 cryptography 42.0.2 py311hd4332d6_0 cssselect 1.2.0 py311hca03da5_0 curl 8.5.0 h02f6b3c_0 cycler 0.11.0 pyhd3eb1b0_0 cymem 2.0.8 pypi_0 pypi cyrus-sasl 2.1.28 h9131b1a_1 cytoolz 0.12.2 py311h80987f9_0 dask 2023.11.0 py311hca03da5_0 dask-core 2023.11.0 py311hca03da5_0 datashader 0.16.0 py311hca03da5_0 dav1d 1.2.1 h80987f9_0 debugpy 1.6.7 py311h313beb8_0 decorator 5.1.1 pyhd3eb1b0_0 defusedxml 0.7.1 pyhd3eb1b0_0 deprecation 2.1.0 pypi_0 pypi diff-match-patch 20200713 pyhd3eb1b0_0 dill 0.3.7 py311hca03da5_0 distributed 2023.11.0 py311hca03da5_0 distro 1.8.0 py311hca03da5_0 dmglib 0.9.5 py311hca03da5_0 docstring-to-markdown 0.11 py311hca03da5_0 docutils 0.18.1 py311hca03da5_3 entrypoints 0.4 py311hca03da5_0 et_xmlfile 1.1.0 py311hca03da5_0 executing 0.8.3 pyhd3eb1b0_0 filelock 3.13.1 py311hca03da5_0 flake8 6.0.0 py311hca03da5_0 flask 2.2.5 py311hca03da5_0 fmt 9.1.0 h48ca7d4_0 fonttools 4.25.0 pyhd3eb1b0_0 freetype 2.12.1 h1192e45_0 frozendict 2.4.2 py311hca03da5_0 frozenlist 1.4.0 py311h80987f9_0 fsspec 2023.10.0 py311hca03da5_0 future 0.18.3 py311hca03da5_0 gensim 4.3.0 py311h6956b77_0 gettext 0.21.0 h13f89a0_1 gflags 2.2.2 h313beb8_1 giflib 5.2.1 h80987f9_3 gitdb 4.0.7 pyhd3eb1b0_0 gitpython 3.1.37 py311hca03da5_0 glib 2.78.4 h313beb8_0 glib-tools 2.78.4 h313beb8_0 glog 0.5.0 h313beb8_1 gmp 6.2.1 hc377ac9_3 gmpy2 2.1.2 py311h40f64dc_0 gotrue 2.8.1 pypi_0 pypi greenlet 3.0.1 py311h313beb8_0 grpc-cpp 1.48.2 hc60591f_4 gst-plugins-base 1.14.1 h313beb8_1 gstreamer 1.14.1 h80987f9_1 gtest 1.14.0 h48ca7d4_0 h11 0.14.0 py311hca03da5_0 h2 4.1.0 pypi_0 pypi h5py 3.9.0 py311hba6ad2f_0 hdf5 1.12.1 h05c076b_3 heapdict 1.0.1 pyhd3eb1b0_0 holoviews 1.18.3 py311hca03da5_0 hpack 4.0.0 pypi_0 pypi httpcore 1.0.2 py311hca03da5_0 httpx 0.26.0 py311hca03da5_0 hvplot 0.9.2 py311hca03da5_0 hyperframe 6.0.1 pypi_0 pypi hyperlink 21.0.0 pyhd3eb1b0_0 icu 73.1 h313beb8_0 idna 3.4 py311hca03da5_0 imagecodecs 2023.1.23 py311h5e7c512_0 imageio 2.33.1 py311hca03da5_0 imagesize 1.4.1 py311hca03da5_0 imbalanced-learn 0.11.0 py311hca03da5_1 importlib-metadata 7.0.1 py311hca03da5_0 importlib_metadata 7.0.1 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yapf 0.31.0 pyhd3eb1b0_0 yarl 1.13.0 pypi_0 pypi zeromq 4.3.5 h313beb8_0 zfp 1.0.0 h313beb8_0 zict 3.0.0 py311hca03da5_0 zipp 3.17.0 py311hca03da5_0 zlib 1.2.13 h5a0b063_0 zlib-ng 2.0.7 h80987f9_0 zope 1.0 py311hca03da5_1 zope.interface 5.4.0 py311h80987f9_0 zstandard 0.19.0 py311h80987f9_0 zstd 1.5.5 hd90d995_0 ```
ccordoba12 commented 1 month ago

Hey @briancooke01, thanks for reporting. You said:

I'm not sure exactly what it came from. I was installing and importing various packages. pip install numpy -I

that's what caused your problem. The thing is you're using Anaconda and used pip to install Numpy.

That causes this breakage because conda and pip packages are binary incompatible, so they can't be mixed in the same environment. And the only way to fix that in your case is by removing and reinstalling Anaconda.

To properly do that, please follow the second part of our video, which also gives more context about why you shouldn't mix pip and conda packages.