spyder-ide / spyder

Official repository for Spyder - The Scientific Python Development Environment
https://www.spyder-ide.org
MIT License
8.34k stars 1.62k forks source link

remote kernel connection fails #22984

Closed Mark-Torrance closed 2 hours ago

Mark-Torrance commented 3 hours ago

Description

What steps will reproduce the problem?

Connect to remote kernel on linux server via instructions here. https://docs.spyder-ide.org/5/panes/ipythonconsole.html#using-external-kernels

This has previously been successful.

Traceback

Exception in comms call get_namespace_view:
  File "C:\WPy64-31241\python-3.12.4.amd64\Lib\site-packages\spyder_kernels\comms\commbase.py", line 317, in _comm_message
    buffer = cloudpickle.loads(msg['buffers'][0],
                               ~~~~~~~~~~~~~~^^^
IndexError: list index out of range
Exception in comms call get_var_properties:
  File "C:\WPy64-31241\python-3.12.4.amd64\Lib\site-packages\spyder_kernels\comms\commbase.py", line 317, in _comm_message
    buffer = cloudpickle.loads(msg['buffers'][0],
                               ~~~~~~~~~~~~~~^^^
IndexError: list index out of range
Exception in comms call is_special_kernel_valid:
  File "C:\WPy64-31241\python-3.12.4.amd64\Lib\site-packages\spyder_kernels\comms\commbase.py", line 317, in _comm_message
    buffer = cloudpickle.loads(msg['buffers'][0],
                               ~~~~~~~~~~~~~~^^^
IndexError: list index out of range

Versions

Dependencies

# Mandatory:
atomicwrites >=1.2.0             :  1.4.0 (OK)
chardet >=2.0.0                  :  5.2.0 (OK)
cloudpickle >=0.5.0              :  3.0.0 (OK)
cookiecutter >=1.6.0             :  2.6.0 (OK)
diff_match_patch >=20181111      :  20200713 (OK)
intervaltree >=3.0.2             :  3.0.2 (OK)
IPython >=8.13.0,<9.0.0,!=8.17.1 :  8.25.0 (OK)
jedi >=0.17.2,<0.20.0            :  0.19.1 (OK)
jellyfish >=0.7                  :  1.0.3 (OK)
jsonschema >=3.2.0               :  4.19.2 (OK)
keyring >=17.0.0                 :  25.2.1 (OK)
nbconvert >=4.0                  :  7.16.1 (OK)
numpydoc >=0.6.0                 :  1.6.0 (OK)
paramiko >=2.4.0                 :  2.8.0 (OK)
parso >=0.7.0,<0.9.0             :  0.8.4 (OK)
pexpect >=4.4.0                  :  4.8.0 (OK)
pickleshare >=0.4                :  0.7.5 (OK)
psutil >=5.3                     :  5.9.8 (OK)
pygments >=2.0                   :  2.18.0 (OK)
pylint >=3.1,<4                  :  3.1.0 (OK)
pylint_venv >=3.0.2              :  3.0.3 (OK)
pyls_spyder >=0.4.0              :  0.4.0 (OK)
pylsp >=1.11.0,<1.12.0           :  1.11.0 (OK)
pylsp_black >=2.0.0,<3.0.0       :  2.0.0 (OK)
qdarkstyle >=3.2.0,<3.3.0        :  3.2.3 (OK)
qstylizer >=0.2.2                :  0.2.2 (OK)
qtawesome >=1.3.1,<1.4.0         :  1.3.1 (OK)
qtconsole >=5.5.1,<5.6.0         :  5.5.2 (OK)
qtpy >=2.1.0                     :  2.4.1 (OK)
rtree >=0.9.7                    :  1.1.0 (OK)
setuptools >=49.6.0              :  69.5.1 (OK)
sphinx >=0.6.6                   :  7.2.6 (OK)
spyder_kernels >=2.5.2,<2.6.0    :  2.5.2 (OK)
textdistance >=4.2.0             :  4.5.0 (OK)
three_merge >=0.1.1              :  0.1.1 (OK)
watchdog >=0.10.3                :  2.2.0 (OK)
zmq >=24.0.0                     :  26.0.3 (OK)

# Optional:
cython >=0.21                    :  3.0.10 (OK)
matplotlib >=3.0.0               :  3.9.0 (OK)
numpy >=1.7                      :  1.26.4 (OK)
pandas >=1.1.1                   :  2.2.2 (OK)
scipy >=0.17.0                   :  1.13.1 (OK)
sympy >=0.7.3                    :  1.12.1 (OK)

Environment

Environment ``` Package Version ----------------------------- ------------------- about-time 4.2.1 absl-py 2.0.0 accelerate 0.28.0 adbc-driver-manager 0.11.0 adodbapi 2.6.1.3 affine 2.3.1 aiofiles 23.2.1 aiohttp 3.9.5 aiosignal 1.3.1 aiosqlite 0.20.0 alabaster 0.7.16 alembic 1.13.1 alive-progress 3.1.5 altair 5.3.0 altair-data-server 0.4.1 altair-transform 0.2.0 aniso8601 9.0.1 annotated-types 0.6.0 ansicolors 1.1.8 anyio 4.4.0 anywidget 0.9.12 appdirs 1.4.4 argon2-cffi 23.1.0 argon2-cffi-bindings 21.2.0 array_api_compat 1.7.1 arrow 1.2.2 asgi-csrf 0.9 asgiref 3.8.1 asn1crypto 1.5.1 asteval 0.9.31 astroid 3.1.0 astropy 6.1.0 astropy-iers-data 0.2024.4.29.0.28.48 asttokens 2.4.1 async-lru 2.0.4 async-timeout 4.0.3 atomicwrites 1.4.0 attrs 23.2.0 autograd 1.6.2 autopep8 2.0.4 azure-core 1.30.1 azure-cosmos 4.6.0 azure-identity 1.16.0 Babel 2.15.0 baresql 0.8.0 bcrypt 4.0.1 beautifulsoup4 4.12.2 binaryornot 0.4.4 black 24.4.2 bleach 6.1.0 blinker 1.7.0 bokeh 3.4.1 botorch 0.9.5 branca 0.7.2 Brotli 1.1.0 build 1.2.1 cachelib 0.13.0 cachetools 5.3.3 Cartopy 0.23.0 certifi 2024.6.2 cffi 1.16.0 cftime 1.6.3 chardet 5.2.0 charset-normalizer 3.3.2 clarabel 0.9.0 click 8.1.7 click-default-group 1.2.4 click-plugins 1.1.1 cligj 0.7.2 cloudpickle 3.0.0 clr-loader 0.2.6 clrmagic 0.0.1a2 cma 3.2.2 colorama 0.4.6 colorcet 3.1.0 colorlog 6.8.2 comm 0.2.2 contourpy 1.2.1 cookiecutter 2.6.0 coverage 7.5.3 cryptography 41.0.5 cvxopt 1.3.2 cvxpy 1.5.0 cycler 0.12.1 Cython 3.0.10 cytoolz 0.12.3 dash 2.17.0 dash-core-components 2.0.0 dash-html-components 2.0.0 dash-table 5.0.0 dask 2024.5.2 dask-expr 1.1.2 dask-image 2024.5.3 datasette 0.64.6 datasette-graphql 2.2 datashader 0.16.2 db.py 0.5.4b1 deap 1.4.1 debugpy 1.8.0 decorator 4.4.2 defusedxml 0.7.1 Deprecated 1.2.13 diff-match-patch 20200713 dill 0.3.7 dirty-cat 0.4.1 distlib 0.3.8 distributed 2024.5.2 distro 1.8.0 Django 5.0.6 dnspython 2.6.1 docopt 0.6.2 docstring-to-markdown 0.13 docutils 0.20.1 duckdb 1.0.0 ecos 2.0.13 email_validator 2.1.1 entrypoints 0.4 et-xmlfile 1.1.0 executing 2.0.1 fast-histogram 0.14 fastapi 0.111.0 fastapi-cli 0.0.4 fastjsonschema 2.18.0 filelock 3.14.0 filterpy 1.4.5 fiona 1.9.5 flake8 7.0.0 Flask 3.0.3 Flask-Mail 0.9.1 Flask-Session 0.5.0 Flask-SQLAlchemy 3.0.5 flit 3.9.0 flit_core 3.9.0 folium 0.16.0 fonttools 4.51.0 formlayout 1.2.1a1 fqdn 1.5.1 frozenlist 1.4.1 fsspec 2024.3.1 future 0.18.2 fuzzywuzzy 0.18.0 GDAL 3.7.3 geographiclib 2.0 geopandas 0.14.4 geopy 2.4.1 gitdb 4.0.10 GitPython 3.1.32 gpytorch 1.11 grapheme 0.6.0 graphene 3.3 graphql-core 3.2.3 graphql-relay 3.2.0 greenlet 3.0.3 guidata 3.5.0 h11 0.14.0 h2 4.1.0 h5py 3.10.0 hatchling 1.24.2 holoviews 1.19.0 hpack 4.0.0 html5lib 1.1 httpcore 1.0.5 httpie 3.2.2 httptools 0.6.1 httpx 0.27.0 huggingface-hub 0.23.0 hupper 1.12 hvplot 0.10.0 Hypercorn 0.16.0 hyperframe 6.0.1 hypothesis 6.100.5 idna 3.7 imageio 2.33.1 imageio-ffmpeg 0.4.8 imagesize 1.4.1 imbalanced-learn 0.12.3 importlib_metadata 7.1.0 inflection 0.5.1 iniconfig 2.0.0 intervaltree 3.0.2 ipycanvas 0.13.2 ipykernel 6.29.4 ipyleaflet 0.19.1 ipympl 0.9.4 ipython 8.25.0 ipython-genutils 0.2.0 ipython-sql 0.5.0 ipywidgets 8.1.2 isoduration 20.11.0 isort 5.13.2 itsdangerous 2.2.0 janus 1.0.0 jaraco.classes 3.4.0 jaraco.context 5.3.0 jaraco.functools 4.0.1 jaxtyping 0.2.22 jedi 0.19.1 jellyfish 1.0.3 Jinja2 3.1.2 joblib 1.4.2 json5 0.9.14 jsonpatch 1.33 jsonpointer 2.4 jsonschema 4.19.2 jsonschema-specifications 2023.12.1 julia 0.6.2 jupyter 1.0.0 jupyter_bokeh 4.0.5 jupyter_client 8.6.2 jupyter-console 6.6.3 jupyter_core 5.7.2 jupyter-events 0.10.0 jupyter-leaflet 0.19.1 jupyter-lsp 2.2.5 jupyter_server 2.14.1 jupyter_server_terminals 0.5.3 jupyterlab 4.2.2 jupyterlab_pygments 0.3.0 jupyterlab_server 2.27.2 jupyterlab_widgets 3.0.11 keras 3.3.3 keyring 25.2.1 kiwisolver 1.4.5 kornia 0.7.2 kornia_rs 0.1.3 langchain 0.2.5 langchain-core 0.2.7 langchain-text-splitters 0.2.1 langsmith 0.1.77 lazy_loader 0.4 lightning 2.2.1 lightning-utilities 0.10.0 linear-operator 0.5.1 linkify-it-py 2.0.2 llvmlite 0.43.0 lmfit 1.3.1 locket 1.0.0 lxml 5.2.2 Mako 1.2.0 Markdown 3.5.1 markdown-it-py 2.2.0 MarkupSafe 2.1.1 matplotlib 3.9.0 matplotlib-inline 0.1.7 maturin 1.5.1 mccabe 0.7.0 mdit-py-plugins 0.3.5 mdurl 0.1.2 mercantile 1.2.1 mergedeep 1.3.4 missingno 0.5.1 mistune 2.0.5 mizani 0.11.4 ml-dtypes 0.4.0 mlxtend 0.22.0 more-itertools 10.2.0 moviepy 1.0.3 mpl-scatter-density 0.7 mpld3 0.5.8 mpmath 1.3.0 msal 1.24.1 msal-extensions 1.0.0 msgpack 1.0.4 msvc_runtime 14.40.33807 multidict 6.0.5 multipledispatch 1.0.0 mutagen 1.47.0 mypy 1.10.0 mypy-extensions 1.0.0 mysql-connector-python 8.0.21 namex 0.0.8 nbclient 0.10.0 nbconvert 7.16.1 nbformat 5.10.4 nest-asyncio 1.6.0 netCDF4 1.6.5 networkx 3.3 nltk 3.8.1 notebook 7.2.1 notebook_shim 0.2.4 ntlm-auth 1.5.0 numba 0.60.0 numexpr 2.10.0 numpy 1.26.4 numpydoc 1.6.0 openai 1.33.0 opencv-python 4.10.0.82 openpyxl 3.1.2 opt-einsum 3.3.0 optree 0.11.0 optuna 3.6.1 orjson 3.9.15 ortools 9.8.3296 outcome 1.3.0.post0 overrides 7.7.0 packaging 24.1 pandas 2.2.2 pandocfilters 1.5.0 panel 1.4.4 papermill 2.6.0 param 2.1.0 paramiko 2.8.0 parso 0.8.4 partd 1.4.0 pathspec 0.11.0 patsy 0.5.6 pdfrw 0.4.post2 pep8 1.7.1 pexpect 4.8.0 pg8000 1.23.0 pickleshare 0.7.5 pillow 10.3.0 PIMS 0.6.1 Pint 0.23 pip 24.0 pkginfo 1.9.6 platformdirs 4.2.2 plotly 5.22.0 plotnine 0.13.6 PlotPy 2.3.0 pluggy 1.5.0 ply 3.11 pmdarima 2.0.4 polars 0.20.31 portalocker 2.7.0 portpicker 1.5.0 ppci 0.5.9 prettytable 3.3.0 priority 2.0.0 proglog 0.1.10 prometheus-client 0.18.0 prompt-toolkit 3.0.43 protobuf 4.25.1 psutil 5.9.8 psygnal 0.11.1 ptpython 3.0.26 ptyprocess 0.7.0 PuLP 2.6.0 pure-eval 0.2.2 pyarrow 16.1.0 PyAudio 0.2.14 pybars3 0.9.7 pybind11 2.12.0 pycodestyle 2.11.1 pycosat 0.6.6 pycparser 2.22 pycryptodomex 3.20.0 pyct 0.5.0 pydantic 2.7.1 pydantic_core 2.18.2 pydeck 0.9.1 pydocstyle 6.3.0 pydub 0.25.1 pyepsg 0.4.0 pyerfa 2.0.1.4 pyflakes 3.2.0 pygame 2.5.2 Pygments 2.18.0 PyJWT 2.8.0 pylint 3.1.0 pylint-venv 3.0.3 pyls-spyder 0.4.0 PyMeta3 0.5.1 pymongo 4.7.2 pymoo 0.6.1.1 Pympler 1.0.1 PyNaCl 1.5.0 pynndescent 0.5.12 pyodbc 5.1.0 Pyomo 6.7.2 pypandoc 1.5 pyparsing 3.1.2 pypdf 3.15.2 pypng 0.20220715.0 pyproj 3.6.1 pyproject_hooks 1.1.0 PyQt5 5.15.10 PyQt5-Qt5 5.15.2 PyQt5-sip 12.13.0 pyqtgraph 0.13.7 PyQtWebEngine 5.15.6 PyQtWebEngine-Qt5 5.15.2 pyro-api 0.1.2 pyro-ppl 1.9.0 pyserial 3.5 pyshp 2.3.1 PySimpleGUI 4.60.4 PySocks 1.7.1 pytest 8.2.0 python-barcode 0.15.1 python-dateutil 2.8.2 python-dotenv 1.0.1 python-json-logger 2.0.7 python-lsp-black 2.0.0 python-lsp-jsonrpc 1.1.2 python-lsp-server 1.11.0 python-multipart 0.0.9 python-slugify 6.1.2 pythonnet 3.0.3 PythonQwt 0.12.1 pytoolconfig 1.3.1 pytorch-lightning 2.2.1 pytz 2023.3 pytz-deprecation-shim 0.1.0.post0 pyviz_comms 3.0.2 pywin32 306 pywin32-ctypes 0.2.2 pywinpty 2.0.12 pywinusb 0.4.2 PyYAML 6.0.1 pyzmq 26.0.3 QDarkStyle 3.2.3 qpsolvers 4.3.0 qrcode 7.4.2 qstylizer 0.2.2 QtAwesome 1.3.1 qtconsole 5.5.2 QtPy 2.4.1 quantecon 0.5.3 Quart 0.19.4 rapidfuzz 3.5.2 rasterio 1.3.10 readme-renderer 35.0 redis 4.3.1 referencing 0.31.1 regex 2023.10.3 reportlab 4.2.0 requests 2.31.0 requests-ntlm 1.1.0 requests-toolbelt 1.0.0 retrying 1.3.4 rfc3339-validator 0.1.4 rfc3986 2.0.0 rfc3986-validator 0.1.1 rich 13.7.1 rope 1.12.0 rpds-py 0.13.2 Rtree 1.1.0 Rx 3.1.1 safetensors 0.4.2 scikit-image 0.23.2 scikit-learn 1.5.0 scipy 1.13.1 scramp 1.4.1 scs 3.2.4.post1 seaborn 0.13.2 Send2Trash 1.8.2 setuptools 69.5.1 shapely 2.0.4 shellingham 1.5.0.post1 simplegeneric 0.8.1 simplejson 3.19.2 simpy 4.0.1 six 1.16.0 slicerator 1.1.0 smmap 5.0.0 sniffio 1.3.0 snowballstemmer 2.2.0 snuggs 1.4.7 sortedcontainers 2.4.0 sounddevice 0.4.6 soupsieve 2.5 Sphinx 7.2.6 sphinx-rtd-theme 2.0.0 sphinxcontrib-applehelp 1.0.2 sphinxcontrib-devhelp 1.0.2 sphinxcontrib-htmlhelp 2.0.0 sphinxcontrib-jquery 4.1 sphinxcontrib-jsmath 1.0.1 sphinxcontrib-qthelp 1.0.3 sphinxcontrib-serializinghtml 1.1.9 spyder 5.5.5 spyder-kernels 2.5.2 SQLAlchemy 2.0.28 sqlite_bro 0.13.1 sqlite-fts4 1.0.3 sqlite-utils 3.36 sqlparse 0.4.3 sspyrs 0.3 stack-data 0.6.3 starlette 0.37.2 statsmodels 0.14.2 streamlit 1.35.0 streamz 0.6.3 swifter 1.3.4 sympy 1.12.1 tabulate 0.9.0 tbats 1.1.0 tblib 1.7.0 tenacity 8.1.0 terminado 0.18.1 text-unidecode 1.3 textdistance 4.5.0 threadpoolctl 3.5.0 three-merge 0.1.1 tifffile 2023.7.18 tinycss2 1.1.1 tokenizers 0.15.1 toml 0.10.2 tomli 2.0.1 tomli_w 1.0.0 tomlkit 0.12.3 toolz 0.12.0 torch 2.2.2 torchaudio 2.2.2 torchmetrics 1.3.2 torchvision 0.17.2 tornado 6.4 tqdm 4.66.4 traitlets 5.14.1 traittypes 0.2.1 transformers 4.38.2 trio 0.25.1 trove-classifiers 2023.2.20 twine 4.0.1 typeguard 2.13.3 typer 0.12.3 typing_extensions 4.9.0 tzdata 2022.7 tzlocal 4.2 uc-micro-py 1.0.1 ujson 5.8.0 umap-learn 0.5.1 uncertainties 3.1.7 uri-template 1.2.0 urllib3 2.0.3 uvicorn 0.29.0 vega-datasets 0.9.0 virtualenv 20.26.2 waitress 2.1.2 wasmer 1.1.0 wasmer-compiler-cranelift 1.1.0 wasmer-compiler-singlepass 1.1.0 watchdog 2.2.0 watchfiles 0.21.0 wcwidth 0.2.13 webcolors 1.12 webencodings 0.5.1 websocket-client 1.8.0 websockets 12.0 Werkzeug 3.0.3 whatthepatch 1.0.2 wheel 0.43.0 widgetsnbextension 4.0.10 winpython 8.2.20240618 wordcloud 1.9.3 wrapt 1.14.1 wsproto 1.2.0 xarray 2024.6.0 XlsxWriter 3.1.9 xlwings 0.24.7 xmltodict 0.13.0 xyzservices 2023.10.1 yapf 0.40.1 yarl 1.7.2 yt-dlp 2023.7.6 zict 3.0.0 zipp 3.17.0 zstandard 0.22.0 ```
Mark-Torrance commented 2 hours ago

For Spyder 5.5.5, resolved by installing spyder-kernels 2.5.2 on both local and remote