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sqjin / CellChat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
GNU General Public License v3.0
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Issue with installing CellChat package in R studio #739

Open Navya156 opened 8 months ago

Navya156 commented 8 months ago

**I am unable to install Cell Chat package in R studio, even with BiocManager, Github repositories or devtools..

I am getting the following error. Please help me through this. Please guide me to install CellChat package either in OS or windows. Thank you in advance.**

The downloaded source packages are in ‘/private/var/folders/27/6n67zh0s6bjfkj4j582p7k2r0000gn/T/RtmpIESEZ8/downloaded_packages’ Warning messages: 1: package ‘CellChat’ is not available for Bioconductor version '3.16'

A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages 2: In install.packages(update[instlib == l, "Package"], l, repos = repos, : installation of package ‘igraph’ had non-zero exit status

devtools::install_github("jinworks/CellChat") Downloading GitHub repo jinworks/CellChat@HEAD These packages have more recent versions available. It is recommended to update all of them. Which would you like to update?

1: All
2: CRAN packages only
3: None
4: igraph (1.5.1 -> 1.6.0) [CRAN]

Enter one or more numbers, or an empty line to skip updates: ── R CMD build ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── ✔ checking for file ‘/private/var/folders/27/6n67zh0s6bjfkj4j582p7k2r0000gn/T/RtmpIESEZ8/remotes155d830d8dac7/jinworks-CellChat-39e0f14/DESCRIPTION’ ... ─ preparing ‘CellChat’: ✔ checking DESCRIPTION meta-information ... ─ cleaning src ─ checking for LF line-endings in source and make files and shell scripts ─ checking for empty or unneeded directories ─ building ‘CellChat_2.1.1.tar.gz’

ERROR: dependencies ‘ComplexHeatmap’, ‘presto’ are not available for package ‘CellChat’

sqjin commented 8 months ago

@Navya156 Obviously, you should check how to install dependencies ‘ComplexHeatmap’, ‘presto’