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sqjin / scAI

An unsupervised approach for the integrative analysis of single-cell multi-omics data
GNU General Public License v3.0
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10x single cell RNA seq and scATAC seq integration #8

Closed ankushs0128 closed 4 years ago

ankushs0128 commented 4 years ago

Is there a easier way to import 10x scRNAseq and scATAC sea data into create_scAIobject? Is there a walkthrough using 10x genomics data?

sqjin commented 4 years ago

Is there a easier way to import 10x scRNAseq and scATAC sea data into create_scAIobject? Is there a walkthrough using 10x genomics data? Hello! Sorry for the late reply. The inputs of create_scAIobject are two data matrix. We did not have functions to connect it with 10X genomics data for now. I would suggest to use other tools for generating the required data matrix. Thanks!