Some introductory materials

[sr320]

With new personnel on boarding (as well as those old hands that have lost your way) here are a few items to tackle in the next few weeks to get familiar with current activities

• [x] Get a GitHub account
• [ ] check G+ community - post questions
• [ ] take a look at this recent chapter on mollusc genomics in aquaculture
• [ ] browse the text for our bioinformatics class (we will go over this in detail later).
• [ ] learn Markdown ; see also
• [ ] browse some notebooks
• [x] post a comment below (something beyond plain text)
• [ ] read this paper on methylation

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⚠️ note some links to Gdrive require using your UW account. 📚

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One of the first things to do will be create a lab notebook online. There are a few suitable options we will discuss in lab meeting.

[yaaminiv]

[sr320]

👍

[jldimond]

Moment of zen

[kubu4]

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DATA High-throughput Sequencing Data: http://owl.fish.washington.edu/nightingales/

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COMPUTING Roberts Lab Computers and printers (roadrunner and hummingbird are the high-powered computers for general use): https://docs.google.com/spreadsheets/d/1mtIITcjqZVEQtynYZFdOdx51uXTiXP7Jvvzv_SnWCDY/edit?usp=sharing

Server (named Owl; I'll set you up with login info in a bit): https://128.95.149.83:5001/index.cgi

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GENERAL LAB

Roberts Lab GitHub: https://github.com/sr320/LabDocs

Purchasing requests (submit as Issue on GitHub; please use Purchasing label): https://github.com/sr320/LabDocs/issues

Shipping/mailing address: Fishery Sciences, 1122 NE Boat St., Rm. 116, Seattle, WA 98105

Roberts Lab GitHub wiki (protocols for RNA isolation, DNAsing, reverse transcription, qPCR): https://github.com/sr320/LabDocs/wiki

Roberts Lab general protocols/recipes: http://genefish.wikispaces.com/protocols

Primer Database: https://docs.google.com/spreadsheets/d/14m2kkFhxcoKWWIGoAD_7VOVsAg9wilME2UcSLqfnqLI/edit?usp=sharing&authkey=CP736rQK

Lab Calendar: https://calendar.google.com/calendar/embed?src=mrc305%40gmail.com&ctz=America/Los_Angeles

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SAFETY UW Lab Safety Manual: http://genefish.wikispaces.com/UW_LabSafety

[sr320]

[Ellior2]

[MeganHintz]

[sr320]

Three basics

1) G+ Community (a primary means of communication) Monitor / post stuff / questions @ https://plus.google.com/u/0/communities/113620706114893538778

2) GitHub (a lot is going on here) but for now, just try to at least monitor when you are mentioned or assigned something. This is one core repo - https://github.com/sr320/LabDocs where we will try to centralize "stuff"

3) Lab Calendar - again, just be aware of.